Survival prediction using gene expression data: a review and comparison

WN Van Wieringen, D Kun, R Hampel… - Computational statistics & …, 2009 - Elsevier
Knowledge of transcription of the human genome might greatly enhance our understanding
of cancer. In particular, gene expression may be used to predict the survival of cancer …

NOTCH, ASCL1, p53 and RB alterations define an alternative pathway driving neuroendocrine and small cell lung carcinomas

L Meder, K König, L Ozretić… - … journal of cancer, 2016 - Wiley Online Library
Small cell lung cancers (SCLCs) and extrapulmonary small cell cancers (SCCs) are very
aggressive tumors arising de novo as primary small cell cancer with characteristic genetic …

Prediction of recurrence-free survival in postoperative non–small cell lung cancer patients by using an integrated model of clinical information and gene expression

ES Lee, DS Son, SH Kim, J Lee, J Jo, J Han, H Kim… - Clinical cancer …, 2008 - AACR
Purpose: One of the main challenges of lung cancer research is identifying patients at high
risk for recurrence after surgical resection. Simple, accurate, and reproducible methods of …

The application of bayesian methods in cancer prognosis and prediction

J Chu, NA Sun, W Hu, X Chen, N Yi… - Cancer Genomics & …, 2022 - cgp.iiarjournals.org
With the development of high-throughput biological techniques, high-dimensional omics
data have emerged. These molecular data provide a solid foundation for precision medicine …

[HTML][HTML] Boosting the concordance index for survival data–a unified framework to derive and evaluate biomarker combinations

A Mayr, M Schmid - PloS one, 2014 - journals.plos.org
The development of molecular signatures for the prediction of time-to-event outcomes is a
methodologically challenging task in bioinformatics and biostatistics. Although there are …

Accuracy-rejection curves (ARCs) for comparing classification methods with a reject option

MSA Nadeem, JD Zucker… - Machine Learning in …, 2009 - proceedings.mlr.press
Data extracted from microarrays are now considered an important source of knowledge
about various diseases. Several studies based on microarray data and the use of receiver …

Accurate prediction of neuroblastoma outcome based on miRNA expression profiles

JH Schulte, B Schowe, P Mestdagh… - … Journal of Cancer, 2010 - Wiley Online Library
For neuroblastoma, the most common extracranial tumour of childhood, identification of new
biomarkers and potential therapeutic targets is mandatory to improve risk stratification and …

Gradient lasso for Cox proportional hazards model

I Sohn, J Kim, SH Jung, C Park - Bioinformatics, 2009 - academic.oup.com
Motivation: There has been an increasing interest in expressing a survival phenotype (eg
time to cancer recurrence or death) or its distribution in terms of a subset of the expression …

[HTML][HTML] Iterative bayesian model averaging: A method for the application of survival analysis to high-dimensional microarray data

A Annest, RE Bumgarner, AE Raftery, KY Yeung - BMC bioinformatics, 2009 - Springer
Background Microarray technology is increasingly used to identify potential biomarkers for
cancer prognostics and diagnostics. Previously, we have developed the iterative Bayesian …

Bayesian neural network approach for determining the risk of re-intervention after endovascular aortic aneurysm repair

O Attallah, X Ma - … of the Institution of Mechanical Engineers …, 2014 - journals.sagepub.com
This article proposes a Bayesian neural network approach to determine the risk of re-
intervention after endovascular aortic aneurysm repair surgery. The target of proposed …