Tiara: deep learning-based classification system for eukaryotic sequences
Motivation With a large number of metagenomic datasets becoming available, eukaryotic
metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear …
metagenomics emerged as a new challenge. The proper classification of eukaryotic nuclear …
Priorities for ocean microbiome research
Tara Ocean Foundation Abreu Andre 1 Bourgois … - Nature …, 2022 - nature.com
Microbial communities have essential roles in ocean ecology and planetary health.
Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air …
Microbes participate in nutrient cycles, remove huge quantities of carbon dioxide from the air …
Unifying the known and unknown microbial coding sequence space
Genes of unknown function are among the biggest challenges in molecular biology,
especially in microbial systems, where 40–60% of the predicted genes are unknown …
especially in microbial systems, where 40–60% of the predicted genes are unknown …
Green microalgae in marine coastal waters: The Ocean Sampling Day (OSD) dataset
M Tragin, D Vaulot - Scientific Reports, 2018 - nature.com
The ecology and distribution of green phytoplankton (Chlorophyta) in the ocean is poorly
known because most studies have focused on groups with large cell size such as diatoms or …
known because most studies have focused on groups with large cell size such as diatoms or …
Expanding the world of marine bacterial and archaeal clades
Determining which microbial taxa are out there, where they live, and what they are doing is a
driving approach in marine microbial ecology. The importance of these questions is …
driving approach in marine microbial ecology. The importance of these questions is …
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods
Metazoan metabarcoding is emerging as an essential strategy for inventorying biodiversity,
with diverse projects currently generating massive quantities of community-level data. The …
with diverse projects currently generating massive quantities of community-level data. The …
DNA sequencing as a tool to monitor marine ecological status
Many ocean policies mandate integrated, ecosystem-based approaches to marine
monitoring, driving a global need for efficient, low-cost bioindicators of marine ecological …
monitoring, driving a global need for efficient, low-cost bioindicators of marine ecological …
Hydrocarbon-Degrading Bacteria Alcanivorax and Marinobacter Associated With Microalgae Pavlova lutheri and Nannochloropsis oculata
Marine hydrocarbon-degrading bacteria play an important role in natural petroleum
biodegradation processes and were initially associated with man-made oil spills or natural …
biodegradation processes and were initially associated with man-made oil spills or natural …
An assessment of US microbiome research
E Stulberg, D Fravel, LM Proctor, DM Murray… - Nature …, 2016 - nature.com
Genome-enabled technologies have supported a dramatic increase in our ability to study
microbial communities in environments and hosts. Taking stock of previously funded …
microbial communities in environments and hosts. Taking stock of previously funded …
The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure …
The advancement of metabarcoding techniques, declining costs of high-throughput
sequencing and development of systematic sampling devices, such as autonomous reef …
sequencing and development of systematic sampling devices, such as autonomous reef …