Application of amino acid ionic liquids for increasing the stability of DNA in long term storage

M Khavani, A Mehranfar, H Vahid - Journal of Biomolecular …, 2023 - Taylor & Francis
The structural stability of DNA is important because of its biological activity. DNAs due to
their inherent chemical properties are not stable in an aqueous solution, therefore, a long …

[HTML][HTML] On the potentials of sialic acid derivatives as inhibitors for the mumps virus: A molecular dynamics and quantum chemistry investigation

M Khavani, A Mehranfar, MRK Mofrad - Virus Research, 2023 - Elsevier
Mumps virus is an infectious pathogen causing major health problems for humans such as
encephalitis, orchitis, and parotitis. Therefore, designing an inhibitor for this virus is of great …

Drug–DNA interaction, a joint DFT-D3/MD study on safranal as an anticancer and DNA nanostructure model

E Azarhazin, M Izadyar… - Canadian Journal of …, 2019 - cdnsciencepub.com
In this research, using a combination of quantum mechanics and molecular dynamic (MD)
simulations, the interaction of safranal (2, 6, 6-trimethylcyclohexa-1, 3-dien-1 …

Probing solvent–solvent and solute–solvent interactions in surfactant binary mixtures: solvatochromic parameters, preferential solvation, and quantum theory of atoms …

M Kohantorabi, M Fakhraee, H Salari, MR Gholami - RSC advances, 2016 - pubs.rsc.org
The behaviour of solvatochromic absorbance probes (4-nitroaniline, 4-nitroanisole, and
Reichardt's dye) within binary mixtures of polyethylene glycol p-(1, 1, 3, 3-tetramethylbutyl) …

Probing the effects of the ester functional group, alkyl side chain length and anions on the bulk nanostructure of ionic liquids: a computational study

M Fakhraee, MR Gholami - Physical Chemistry Chemical Physics, 2016 - pubs.rsc.org
The effects of ester addition on nanostructural properties of biodegradable ILs composed of
1-alkoxycarbonyl-3-alkyl-imidazolium cations ([C1COOCnC1im]+, n= 1, 2, 4) combined with …

Development and Test of PBSA Solvation Models for Drug Design

T Niu - 2024 - d-scholarship.pitt.edu
The Poisson-Boltzmann Surface Area (PBSA) model was extensively used to predict
solvation free energy (SFE) and protein-ligand binding free energies, as well as to study …

Proline cis–trans isomerization and its implications for the dimerization of analogues of cyclopeptide stylostatin 1: a combined computational and experimental study

C López-Martínez, P Flores-Morales, M Cruz… - Physical Chemistry …, 2016 - pubs.rsc.org
Cis and trans proline conformers are often associated with dramatic changes in the
biological function of peptides. A slow equilibrium between cis and trans Ile–Pro amide bond …

Effects of the deglycosylation on the structure and activity of chloroperoxidase: Molecular dynamics simulation approach

MG Sangoli, MR Housaindokht… - Journal of Molecular …, 2020 - Elsevier
Chloroperoxidase (CPO) is a versatile fungal heme-thiolate protein that catalyzes a variety
of one electron and two-electron oxidations. Chloroperoxidase is a versatile fungal heme …

The investigation of the structure and stability of catechol complexes with nitrate and hydrogen sulphate ions through theoretical study of hydrogen bond

M Badbedast, M Izadyar, M Gholizadeh - Nashrieh Shimi va Mohandesi …, 2019 - nsmsi.ir
In this research, the mechanism of complex formation between the catechol with the nitrate
and hydrogen sulfate through the hydrogen bond analysis has been investigated. All …

NCI concept as a powerful tool to investigate the origin of Diels–Alder reaction accelerating inside the self-assembled softball nanoreactor

H Sabet-Sarvestani, H Eshghi, M Izadyar… - Journal of Inclusion …, 2016 - Springer
Thermodynamic and kinetic aspects of the Diels–Alder reaction between p–benzoquinone
(1) and cyclohexadiene (2) have been investigated inside the softball nanoreactor …