Investigations on the interface of nucleic acid aptamers and binding targets

S Cai, J Yan, H Xiong, Y Liu, D Peng, Z Liu - Analyst, 2018 - pubs.rsc.org
Nucleic acid aptamers are single-stranded DNA or RNA of 20–100 nucleotides in length that
have attracted substantial scientific interest due to their ability to specifically bind to target …

Cataloguing and selection of mRNAs localized to dendrites in neurons and regulated by RNA-binding proteins in RNA granules

R Ohashi, N Shiina - Biomolecules, 2020 - mdpi.com
Spatiotemporal translational regulation plays a key role in determining cell fate and function.
Specifically, in neurons, local translation in dendrites is essential for synaptic plasticity and …

Affinity pulldown of biotinylated RNA for detection of protein-RNA complexes

AC Panda, JL Martindale, M Gorospe - Bio-protocol, 2016 - bio-protocol.org
RNA-binding proteins (RBPs) have recently emerged as crucial players in the regulation of
gene expression. The interactions of RBPs with target mRNAs control the levels of gene …

LINC00857 promotes cell proliferation and migration in colorectal cancer by interacting with YTHDC1 and stabilizing SLC7A5

S Tang, Q Liu, M Xu - Oncology Letters, 2021 - spandidos-publications.com
Colorectal cancer (CRC) is one of the most lethal malignances in humans. Hence, it is of
great significance to identify regulatory molecules in CRC progression. Accumulating …

Integrated analysis of miRNA and mRNA regulation network in hypertension

W Xu, F Liu, Q Li, L Li, X Liu - Biochemical Genetics, 2023 - Springer
Hypertension is the most common chronic disease. Early diagnosis is helpful for early
medical intervention. The miRNAs and the messenger RNAs (mRNAs) network may be …

Long noncoding RNA H19: functions and mechanisms in regulating programmed cell death in cancer

Y Xia, T Pei, J Zhao, Z Wang, Y Shen, Y Yang… - Cell Death …, 2024 - nature.com
Long noncoding RNAs (lncRNAs) are a group of noncoding RNAs with transcript lengths of>
200 nucleotides. Mounting evidence suggests that lncRNAs are closely associated with …

Rapidly growing protein-centric technologies to extensively identify protein–RNA interactions: Application to the analysis of co-transcriptional RNA processing

A Masuda, T Kawachi, K Ohno - International Journal of Molecular …, 2021 - mdpi.com
During mRNA transcription, diverse RNA-binding proteins (RBPs) are recruited to RNA
polymerase II (RNAP II) transcription machinery. These RBPs bind to distinct sites of nascent …

Probing the function of long noncoding RNAs in the nucleus

SMK Akkipeddi, AJ Velleca, DM Carone - Chromosome Research, 2020 - Springer
The nucleus is a highly organized and dynamic environment where regulation and
coordination of processes such as gene expression and DNA replication are paramount. In …

RNet: a network strategy to predict RNA binding preferences

H Liu, Y Jian, J Hou, C Zeng… - Briefings in Bioinformatics, 2024 - academic.oup.com
Determining the RNA binding preferences remains challenging because of the bottleneck of
the binding interactions accompanied by subtle RNA flexibility. Typically, designing RNA …

Deciphering RNA-recognition patterns of intrinsically disordered proteins

A Srivastava, S Ahmad, MM Gromiha - International journal of molecular …, 2018 - mdpi.com
Intrinsically disordered regions (IDRs) and protein (IDPs) are highly flexible owing to their
lack of well-defined structures. A subset of such proteins interacts with various substrates; …