[HTML][HTML] Multi-omics analysis of CRISPRi-knockdowns identifies mechanisms that buffer decreases of enzymes in E. coli metabolism
S Donati, M Kuntz, V Pahl, N Farke, D Beuter, T Glatter… - Cell Systems, 2021 - cell.com
Enzymes maintain metabolism, and their concentration affects cellular fitness: high enzyme
levels are costly, and low enzyme levels can limit metabolic flux. Here, we used CRISPR …
levels are costly, and low enzyme levels can limit metabolic flux. Here, we used CRISPR …
[HTML][HTML] Improved prediction of bacterial CRISPRi guide efficiency from depletion screens through mixed-effect machine learning and data integration
CRISPR interference (CRISPRi) is the leading technique to silence gene expression in
bacteria; however, design rules remain poorly defined. We develop a best-in-class …
bacteria; however, design rules remain poorly defined. We develop a best-in-class …
Morphological and transcriptional responses to CRISPRi knockdown of essential genes in Escherichia coli
ABSTRACT CRISPR interference (CRISPRi) has facilitated the study of essential genes in
diverse organisms using both high-throughput and targeted approaches. Despite the …
diverse organisms using both high-throughput and targeted approaches. Despite the …
Genome editing of lactic acid bacteria: opportunities for food, feed, pharma and biotech
RA Börner, V Kandasamy, AM Axelsen… - FEMS microbiology …, 2019 - academic.oup.com
This mini-review provides a perspective of traditional, emerging and future applications of
lactic acid bacteria (LAB) and how genome editing tools can be used to overcome current …
lactic acid bacteria (LAB) and how genome editing tools can be used to overcome current …
Bacterial genome reduction for optimal chassis of synthetic biology: a review
S Ma, T Su, X Lu, Q Qi - Critical Reviews in Biotechnology, 2024 - Taylor & Francis
Bacteria with streamlined genomes, that harbor full functional genes for essential metabolic
networks, are able to synthesize the desired products more effectively and thus have …
networks, are able to synthesize the desired products more effectively and thus have …
Editing the microbiome the CRISPR way
G Ramachandran, D Bikard - … Transactions of the …, 2019 - royalsocietypublishing.org
Our bodies are colonized by a complex ecosystem of bacteria, unicellular eukaryotes and
their viruses that together play a major role in our health. Over the past few years tools …
their viruses that together play a major role in our health. Over the past few years tools …
[HTML][HTML] Theragnostic application of nanoparticle and CRISPR against food-borne multi-drug resistant pathogens
Foodborne infection is one of the leading sources of infections spreading across the world.
Foodborne pathogens are recognized as multidrug-resistant (MDR) pathogens posing a …
Foodborne pathogens are recognized as multidrug-resistant (MDR) pathogens posing a …
[HTML][HTML] Systematic and scalable genome-wide essentiality mapping to identify nonessential genes in phages
Phages are one of the key ecological drivers of microbial community dynamics, function, and
evolution. Despite their importance in bacterial ecology and evolutionary processes, phage …
evolution. Despite their importance in bacterial ecology and evolutionary processes, phage …
CRISPRi-microfluidics screening enables genome-scale target identification for high-titer protein production and secretion
X Yu, S Li, H Feng, X Liao, XH Xing, Z Bai, X Liu… - Metabolic …, 2023 - Elsevier
Genome-scale target identification promises to guide microbial cell factory engineering for
higher-titer production of biomolecules such as recombinant proteins (r-protein), but …
higher-titer production of biomolecules such as recombinant proteins (r-protein), but …
Bacterial CRISPR screens for gene function
H Todor, MR Silvis, H Osadnik, CA Gross - Current opinion in microbiology, 2021 - Elsevier
Highlights•Bacterial CRISPR approaches are used for gene editing, repression, and
activation.•CRISPRi, which blocks transcription of targeted genes, is the main bacterial …
activation.•CRISPRi, which blocks transcription of targeted genes, is the main bacterial …