CRISPR interference to interrogate genes that control biofilm formation in Pseudomonas fluorescens

MF Noirot-Gros, S Forrester, G Malato, PE Larsen… - Scientific reports, 2019 - nature.com
Bacterial biofilm formation involves signaling and regulatory pathways that control the
transition from motile to sessile lifestyle, production of extracellular polymeric matrix, and …

[HTML][HTML] Toothpicks, logic, and next-generation sequencing: systematic investigation of bacteriophage-host interactions

A Shaidullina, A Harms - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Phage-host interactions have mostly been studied one-by-one using few old
models.•Systematic approaches reveal new molecular mechanisms of phage-host …

A phage foundry framework to systematically develop viral countermeasures to combat antibiotic-resistant bacterial pathogens

VK Mutalik, AP Arkin - Iscience, 2022 - cell.com
At its current rate, the rise of antimicrobial-resistant (AMR) infections is predicted to paralyze
our industries and healthcare facilities while becoming the leading global cause of loss of …

Evolutionary approaches for engineering industrially relevant phenotypes in bacterial cell factories

L Fernández‐Cabezón, A Cros… - Biotechnology journal, 2019 - Wiley Online Library
The bio‐based production of added‐value compounds (with applications as
pharmaceuticals, biofuels, food ingredients, and building blocks) using bacterial platforms is …

Challenges for the application of bacteriophages as effective antibacterial agents in the food industry

J Li, F Zhao, W Zhan, Z Li, L Zou… - Journal of the Science of …, 2022 - Wiley Online Library
Food contamination caused by foodborne pathogens is one of the most important concerns
in public health worldwide, and accounts for a significant portion of food loss every year. The …

Large-scale CRISPRi and transcriptomics of Staphylococcus epidermidis identify genetic factors implicated in lifestyle versatility

M Spoto, JP Riera Puma, E Fleming, C Guan… - MBio, 2022 - Am Soc Microbiol
Staphylococcus epidermidis is a ubiquitous human commensal skin bacterium that is also
one of the most prevalent nosocomial pathogens. The genetic factors underlying this …

Application of combined CRISPR screening for genetic and chemical-genetic interaction profiling in Mycobacterium tuberculosis

MY Yan, D Zheng, SS Li, XY Ding, CL Wang… - Science …, 2022 - science.org
CRISPR screening, including CRISPR interference (CRISPRi) and CRISPR-knockout
(CRISPR-KO) screening, has become a powerful technology in the genetic screening of …

Genome-wide CRISPRi-based identification of targets for decoupling growth from production

S Li, CB Jendresen, J Landberg… - ACS Synthetic …, 2020 - ACS Publications
Growth decoupling can be used to optimize microbial production of biobased compounds by
inhibiting excess biomass formation and redirect carbon flux from growth to product …

Programmable gene knockdown in diverse bacteria using Mobile‐CRISPRi

AB Banta, RD Ward, JS Tran… - Current protocols in …, 2020 - Wiley Online Library
Facile bacterial genome sequencing has unlocked a veritable treasure trove of novel genes
awaiting functional exploration. To make the most of this opportunity requires powerful …

[HTML][HTML] Genome-scale CRISPRi screening: a powerful tool in engineering microbiology

L Sun, P Zheng, J Sun, VF Wendisch, Y Wang - Engineering Microbiology, 2023 - Elsevier
Deciphering gene function is fundamental to engineering of microbiology. The clustered
regularly interspaced short palindromic repeats (CRISPR) system has been adapted for …