CRISPR interference to interrogate genes that control biofilm formation in Pseudomonas fluorescens
Bacterial biofilm formation involves signaling and regulatory pathways that control the
transition from motile to sessile lifestyle, production of extracellular polymeric matrix, and …
transition from motile to sessile lifestyle, production of extracellular polymeric matrix, and …
[HTML][HTML] Toothpicks, logic, and next-generation sequencing: systematic investigation of bacteriophage-host interactions
A Shaidullina, A Harms - Current Opinion in Microbiology, 2022 - Elsevier
Highlights•Phage-host interactions have mostly been studied one-by-one using few old
models.•Systematic approaches reveal new molecular mechanisms of phage-host …
models.•Systematic approaches reveal new molecular mechanisms of phage-host …
A phage foundry framework to systematically develop viral countermeasures to combat antibiotic-resistant bacterial pathogens
VK Mutalik, AP Arkin - Iscience, 2022 - cell.com
At its current rate, the rise of antimicrobial-resistant (AMR) infections is predicted to paralyze
our industries and healthcare facilities while becoming the leading global cause of loss of …
our industries and healthcare facilities while becoming the leading global cause of loss of …
Evolutionary approaches for engineering industrially relevant phenotypes in bacterial cell factories
L Fernández‐Cabezón, A Cros… - Biotechnology journal, 2019 - Wiley Online Library
The bio‐based production of added‐value compounds (with applications as
pharmaceuticals, biofuels, food ingredients, and building blocks) using bacterial platforms is …
pharmaceuticals, biofuels, food ingredients, and building blocks) using bacterial platforms is …
Challenges for the application of bacteriophages as effective antibacterial agents in the food industry
J Li, F Zhao, W Zhan, Z Li, L Zou… - Journal of the Science of …, 2022 - Wiley Online Library
Food contamination caused by foodborne pathogens is one of the most important concerns
in public health worldwide, and accounts for a significant portion of food loss every year. The …
in public health worldwide, and accounts for a significant portion of food loss every year. The …
Large-scale CRISPRi and transcriptomics of Staphylococcus epidermidis identify genetic factors implicated in lifestyle versatility
M Spoto, JP Riera Puma, E Fleming, C Guan… - MBio, 2022 - Am Soc Microbiol
Staphylococcus epidermidis is a ubiquitous human commensal skin bacterium that is also
one of the most prevalent nosocomial pathogens. The genetic factors underlying this …
one of the most prevalent nosocomial pathogens. The genetic factors underlying this …
Application of combined CRISPR screening for genetic and chemical-genetic interaction profiling in Mycobacterium tuberculosis
CRISPR screening, including CRISPR interference (CRISPRi) and CRISPR-knockout
(CRISPR-KO) screening, has become a powerful technology in the genetic screening of …
(CRISPR-KO) screening, has become a powerful technology in the genetic screening of …
Genome-wide CRISPRi-based identification of targets for decoupling growth from production
S Li, CB Jendresen, J Landberg… - ACS Synthetic …, 2020 - ACS Publications
Growth decoupling can be used to optimize microbial production of biobased compounds by
inhibiting excess biomass formation and redirect carbon flux from growth to product …
inhibiting excess biomass formation and redirect carbon flux from growth to product …
Programmable gene knockdown in diverse bacteria using Mobile‐CRISPRi
Facile bacterial genome sequencing has unlocked a veritable treasure trove of novel genes
awaiting functional exploration. To make the most of this opportunity requires powerful …
awaiting functional exploration. To make the most of this opportunity requires powerful …
[HTML][HTML] Genome-scale CRISPRi screening: a powerful tool in engineering microbiology
L Sun, P Zheng, J Sun, VF Wendisch, Y Wang - Engineering Microbiology, 2023 - Elsevier
Deciphering gene function is fundamental to engineering of microbiology. The clustered
regularly interspaced short palindromic repeats (CRISPR) system has been adapted for …
regularly interspaced short palindromic repeats (CRISPR) system has been adapted for …