The application of bayesian methods in cancer prognosis and prediction

J Chu, NA Sun, W Hu, X Chen, N Yi… - Cancer Genomics & …, 2022 - cgp.iiarjournals.org
With the development of high-throughput biological techniques, high-dimensional omics
data have emerged. These molecular data provide a solid foundation for precision medicine …

De novo sequencing of proteins by mass spectrometry

R Vitorino, S Guedes, F Trindade, I Correia… - Expert Review of …, 2020 - Taylor & Francis
Introduction Proteins are crucial for every cellular activity and unraveling their sequence and
structure is a crucial step to fully understand their biology. Early methods of protein …

Tumor heterogeneity estimation for radiomics in cancer

A Eloyan, MS Yue, D Khachatryan - Statistics in medicine, 2020 - Wiley Online Library
Radiomics is an emerging field of medical image analysis research where quantitative
measurements are obtained from radiological images that can be utilized to predict patient …

Federated learning for sparse Bayesian models with applications to electronic health records and genomics

B Kidd, K Wang, Y Xu, Y Ni - … 2023: Kohala Coast, Hawaii, USA, 3–7 …, 2022 - World Scientific
Federated learning is becoming increasingly more popular as the concern of privacy
breaches rises across disciplines including the biological and biomedical fields. The main …

Peptidomics and proteogenomics: background, challenges and future needs

R Vitorino, M Choudhury, S Guedes… - Expert Review of …, 2021 - Taylor & Francis
Introduction With available genomic data and related information, it is becoming possible to
better highlight mutations or genomic alterations associated with a particular disease or …

Bayesian hierarchical quantile regression with application to characterizing the immune architecture of lung cancer

P Das, CB Peterson, Y Ni, A Reuben, J Zhang… - …, 2023 - academic.oup.com
The successful development and implementation of precision immuno-oncology therapies
requires a deeper understanding of the immune architecture at a patient level. T-cell …

Functional concurrent regression mixture models using spiked Ewens-Pitman attraction priors

M Liang, MD Koslovsky, ET Hébert… - Bayesian …, 2023 - projecteuclid.org
Functional concurrent, or varying-coefficient, regression models are a form of functional data
analysis methods in which functional covariates and outcomes are collected concurrently …

Bayesian varying coefficient model with selection: An application to functional mapping

B Heuclin, F Mortier, C Trottier… - Journal of the Royal …, 2021 - academic.oup.com
How does the genetic architecture of quantitative traits evolve over time? Answering this
question is crucial for many applied fields such as human genetics and plant or animal …

Subject-specific Dirichlet-multinomial regression for multi-district microbiota data analysis

M Pedone, A Amedei, FC Stingo - The Annals of Applied Statistics, 2023 - projecteuclid.org
In this document we discuss the linear constraints imposed to enforce identifiability of the
parameters (Section 1) and the choice of hyperparameters and spline bases (Section 2), we …

Challenges and opportunities for bayesian statistics in proteomics

OM Crook, C Chung, CM Deane - Journal of proteome research, 2022 - ACS Publications
Proteomics is a data-rich science with complex experimental designs and an intricate
measurement process. To obtain insights from the large data sets produced, statistical …