Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Perspectives and benefits of high-throughput long-read sequencing in microbial ecology

L Tedersoo, M Albertsen, S Anslan… - Applied and …, 2021 - Am Soc Microbiol
Short-read, high-throughput sequencing (HTS) methods have yielded numerous important
insights into microbial ecology and function. Yet, in many instances short-read HTS …

High-throughput sequencing view on the magnitude of global fungal diversity

P Baldrian, T Větrovský, C Lepinay, P Kohout - Fungal Diversity, 2022 - Springer
High-throughput DNA sequencing has dramatically transformed several areas of biodiversity
research including mycology. Despite limitations, high-throughput sequencing is nowadays …

Do all fungi have ancestors with endophytic lifestyles?

CS Bhunjun, C Phukhamsakda, KD Hyde… - Fungal Diversity, 2024 - Springer
Fungi are an essential component of any ecosystem and have diverse ecological roles,
ranging from endophytes to epiphytes and pathogens to saprobes. The current estimate of …

Taxonomic and phylogenetic contributions to Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis leaf litter inhabiting microfungi

DS Tennakoon, CH Kuo, SSN Maharachchikumbura… - Fungal Diversity, 2021 - Springer
This article provides descriptions and illustrations of microfungi associated with the leaf litter
of Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis …

The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

L Tedersoo, V Mikryukov, S Anslan, M Bahram… - Fungal Diversity, 2021 - Springer
Fungi are highly important biotic components of terrestrial ecosystems, but we still have a
very limited understanding about their diversity and distribution. This data article releases a …

Forecasting the number of species of asexually reproducing fungi (Ascomycota and Basidiomycota)

NN Wijayawardene, AJL Phillips, DS Pereira, DQ Dai… - Fungal Diversity, 2022 - Springer
Asexually reproducing fungi play a significant role in essential processes in managed and
wild ecosystems such as nutrients cycling and multitrophic interactions. A large number of …

[HTML][HTML]  How, not if, is the question mycologists should be asking about DNA-based typification

RH Nilsson, M Ryberg, C Wurzbacher, L Tedersoo… - MycoKeys, 2023 - ncbi.nlm.nih.gov
 Abstract Fungal metabarcoding of substrates such as soil, wood, and water is uncovering
an unprecedented number of fungal species that do not seem to produce tangible …

PacBio sequencing of Glomeromycota rDNA: a novel amplicon covering all widely used ribosomal barcoding regions and its applicability in taxonomy and ecology of …

Z Kolaříková, R Slavíková, C Krüger, M Krüger… - New …, 2021 - Wiley Online Library
There is no consensus barcoding region for determination of arbuscular mycorrhizal fungal
(AMF) taxa. To overcome this obstacle, we have developed an approach to sequence an …

[HTML][HTML] New-generation sequencing technology in diagnosis of fungal plant pathogens: a dream comes true?

M Aragona, A Haegi, MT Valente, L Riccioni, L Orzali… - Journal of Fungi, 2022 - mdpi.com
The fast and continued progress of high-throughput sequencing (HTS) and the drastic
reduction of its costs have boosted new and unpredictable developments in the field of plant …