Spatial proteomics: a powerful discovery tool for cell biology
E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
Application of machine learning in spatial proteomics
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
of proteins, and it has gained extensive attention in recent years, especially the subcellular …
[HTML][HTML] Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting
Cellular microscopy images contain rich insights about biology. To extract this information,
researchers use features, or measurements of the patterns of interest in the images. Here …
researchers use features, or measurements of the patterns of interest in the images. Here …
Protein subcellular localization based on deep image features and criterion learning strategy
The spatial distribution of proteome at subcellular levels provides clues for protein functions,
thus is important to human biology and medicine. Imaging-based methods are one of the …
thus is important to human biology and medicine. Imaging-based methods are one of the …
[HTML][HTML] Organellar maps through proteomic profiling–a conceptual guide
GHH Borner - Molecular & Cellular Proteomics, 2020 - ASBMB
Protein subcellular localization is an essential and highly regulated determinant of protein
function. Major advances in mass spectrometry and imaging have allowed the development …
function. Major advances in mass spectrometry and imaging have allowed the development …
[HTML][HTML] Single-cell image analysis to explore cell-to-cell heterogeneity in isogenic populations
Single-cell image analysis provides a powerful approach for studying cell-to-cell
heterogeneity, which is an important attribute of isogenic cell populations, from microbial …
heterogeneity, which is an important attribute of isogenic cell populations, from microbial …
YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries
B Dubreuil, E Sass, Y Nadav… - Nucleic Acids …, 2019 - academic.oup.com
The ability to measure the abundance and visualize the localization of proteins across the
yeast proteome has stimulated hypotheses on gene function and fueled discoveries. While …
yeast proteome has stimulated hypotheses on gene function and fueled discoveries. While …
A multi-scale multi-model deep neural network via ensemble strategy on high-throughput microscopy image for protein subcellular localization
Protein subcellular locations are closely related to the function of proteins. By detecting the
abnormalities in subcellular locations, we can infer the occurrence of some diseases and …
abnormalities in subcellular locations, we can infer the occurrence of some diseases and …
Recent advancements in subcellular proteomics: growing impact of organellar protein niches on the understanding of cell biology
V Bhushan, A Nita-Lazar - Journal of Proteome Research, 2024 - ACS Publications
The mammalian cell is a complex entity, with membrane-bound and membrane-less
organelles playing vital roles in regulating cellular homeostasis. Organellar protein niches …
organelles playing vital roles in regulating cellular homeostasis. Organellar protein niches …