Spatial proteomics: a powerful discovery tool for cell biology

E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …

Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Application of machine learning in spatial proteomics

M Mou, Z Pan, M Lu, H Sun, Y Wang… - Journal of Chemical …, 2022 - ACS Publications
Spatial proteomics is an interdisciplinary field that investigates the localization and dynamics
of proteins, and it has gained extensive attention in recent years, especially the subcellular …

[HTML][HTML] Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting

AX Lu, OZ Kraus, S Cooper… - PLoS computational …, 2019 - journals.plos.org
Cellular microscopy images contain rich insights about biology. To extract this information,
researchers use features, or measurements of the patterns of interest in the images. Here …

Protein subcellular localization based on deep image features and criterion learning strategy

R Su, L He, T Liu, X Liu, L Wei - Briefings in Bioinformatics, 2021 - academic.oup.com
The spatial distribution of proteome at subcellular levels provides clues for protein functions,
thus is important to human biology and medicine. Imaging-based methods are one of the …

[HTML][HTML] Organellar maps through proteomic profiling–a conceptual guide

GHH Borner - Molecular & Cellular Proteomics, 2020 - ASBMB
Protein subcellular localization is an essential and highly regulated determinant of protein
function. Major advances in mass spectrometry and imaging have allowed the development …

[HTML][HTML] Single-cell image analysis to explore cell-to-cell heterogeneity in isogenic populations

MM Usaj, CHL Yeung, H Friesen, C Boone… - Cell systems, 2021 - cell.com
Single-cell image analysis provides a powerful approach for studying cell-to-cell
heterogeneity, which is an important attribute of isogenic cell populations, from microbial …

YeastRGB: comparing the abundance and localization of yeast proteins across cells and libraries

B Dubreuil, E Sass, Y Nadav… - Nucleic Acids …, 2019 - academic.oup.com
The ability to measure the abundance and visualize the localization of proteins across the
yeast proteome has stimulated hypotheses on gene function and fueled discoveries. While …

A multi-scale multi-model deep neural network via ensemble strategy on high-throughput microscopy image for protein subcellular localization

J Ding, J Xu, J Wei, J Tang, F Guo - Expert Systems with Applications, 2023 - Elsevier
Protein subcellular locations are closely related to the function of proteins. By detecting the
abnormalities in subcellular locations, we can infer the occurrence of some diseases and …

Recent advancements in subcellular proteomics: growing impact of organellar protein niches on the understanding of cell biology

V Bhushan, A Nita-Lazar - Journal of Proteome Research, 2024 - ACS Publications
The mammalian cell is a complex entity, with membrane-bound and membrane-less
organelles playing vital roles in regulating cellular homeostasis. Organellar protein niches …