[HTML][HTML] Defining HLA-II ligand processing and binding rules with mass spectrometry enhances cancer epitope prediction
Increasing evidence indicates CD4+ T cells can recognize cancer-specific antigens and
control tumor growth. However, it remains difficult to predict the antigens that will be …
control tumor growth. However, it remains difficult to predict the antigens that will be …
Immune epitope database analysis resource
Y Kim, J Ponomarenko, Z Zhu, D Tamang… - Nucleic acids …, 2012 - academic.oup.com
The immune epitope database analysis resource (IEDB-AR: http://tools. iedb. org) is a
collection of tools for prediction and analysis of molecular targets of T-and B-cell immune …
collection of tools for prediction and analysis of molecular targets of T-and B-cell immune …
pVACtools: a computational toolkit to identify and visualize cancer neoantigens
Identification of neoantigens is a critical step in predicting response to checkpoint blockade
therapy and design of personalized cancer vaccines. This is a cross-disciplinary challenge …
therapy and design of personalized cancer vaccines. This is a cross-disciplinary challenge …
Best practices for bioinformatic characterization of neoantigens for clinical utility
Neoantigens are newly formed peptides created from somatic mutations that are capable of
inducing tumor-specific T cell recognition. Recently, researchers and clinicians have …
inducing tumor-specific T cell recognition. Recently, researchers and clinicians have …
A comprehensive review and performance evaluation of bioinformatics tools for HLA class I peptide-binding prediction
Human leukocyte antigen class I (HLA-I) molecules are encoded by major histocompatibility
complex (MHC) class I loci in humans. The binding and interaction between HLA-I …
complex (MHC) class I loci in humans. The binding and interaction between HLA-I …
The role of neoantigens in naturally occurring and therapeutically induced immune responses to cancer
JP Ward, MM Gubin, RD Schreiber - Advances in immunology, 2016 - Elsevier
Definitive experimental evidence from mouse cancer models and strong correlative clinical
data gave rise to the Cancer Immunoediting concept that explains the dual host-protective …
data gave rise to the Cancer Immunoediting concept that explains the dual host-protective …
TepiTool: a pipeline for computational prediction of T cell epitope candidates
Computational prediction of T cell epitope candidates is currently being used in several
applications including vaccine discovery studies, development of diagnostics, and removal …
applications including vaccine discovery studies, development of diagnostics, and removal …
High-throughput prediction of MHC class I and II neoantigens with MHCnuggets
Computational prediction of binding between neoantigen peptides and major
histocompatibility complex (MHC) proteins can be used to predict patient response to cancer …
histocompatibility complex (MHC) proteins can be used to predict patient response to cancer …
Genomic landscape of high-grade meningiomas
High-grade meningiomas frequently recur and are associated with high rates of morbidity
and mortality. To determine the factors that promote the development and evolution of these …
and mortality. To determine the factors that promote the development and evolution of these …
Systematically benchmarking peptide-MHC binding predictors: From synthetic to naturally processed epitopes
W Zhao, X Sher - PLoS computational biology, 2018 - journals.plos.org
A number of machine learning-based predictors have been developed for identifying
immunogenic T-cell epitopes based on major histocompatibility complex (MHC) class I and II …
immunogenic T-cell epitopes based on major histocompatibility complex (MHC) class I and II …