[HTML][HTML] Data resources and computational methods for lncRNA-disease association prediction

N Sheng, L Huang, Y Lu, H Wang, L Yang… - Computers in Biology …, 2023 - Elsevier
Increasing interest has been attracted in deciphering the potential disease pathogenesis
through lncRNA-disease association (LDA) prediction, regarding to the diverse functional …

[HTML][HTML] Deep learning approaches for lncrna-mediated mechanisms: A comprehensive review of recent developments

Y Kim, M Lee - International journal of molecular sciences, 2023 - mdpi.com
This review paper provides an extensive analysis of the rapidly evolving convergence of
deep learning and long non-coding RNAs (lncRNAs). Considering the recent advancements …

[HTML][HTML] BioSeq-Diabolo: biological sequence similarity analysis using Diabolo

H Li, B Liu - PLoS computational biology, 2023 - journals.plos.org
As the key for biological sequence structure and function prediction, disease diagnosis and
treatment, biological sequence similarity analysis has attracted more and more attentions …

LDA-VGHB: identifying potential lncRNA–disease associations with singular value decomposition, variational graph auto-encoder and heterogeneous Newton …

L Peng, L Huang, Q Su, G Tian, M Chen… - Briefings in …, 2024 - academic.oup.com
Long noncoding RNAs (lncRNAs) participate in various biological processes and have close
linkages with diseases. In vivo and in vitro experiments have validated many associations …

Inferring transcription factor regulatory networks from single-cell ATAC-seq data based on graph neural networks

H Li, Y Sun, H Hong, X Huang, H Tao… - Nature Machine …, 2022 - nature.com
Sequence-specific transcription factors (TFs) are the key effectors of eukaryotic gene control
and they regulate hundreds to thousands of downstream genes. Of particular interest are …

LDAformer: predicting lncRNA-disease associations based on topological feature extraction and Transformer encoder

Y Zhou, X Wang, L Yao, M Zhu - Briefings in Bioinformatics, 2022 - academic.oup.com
The identification of long noncoding RNA (lncRNA)-disease associations is of great value for
disease diagnosis and treatment, and it is now commonly used to predict potential lncRNA …

LncRNA-disease association identification using graph auto-encoder and learning to rank

Q Liang, W Zhang, H Wu, B Liu - Briefings in Bioinformatics, 2023 - academic.oup.com
Discovering the relationships between long non-coding RNAs (lncRNAs) and diseases is
significant in the treatment, diagnosis and prevention of diseases. However, current …

Multi-view contrastive heterogeneous graph attention network for lncRNA–disease association prediction

X Zhao, J Wu, X Zhao, M Yin - Briefings in Bioinformatics, 2023 - academic.oup.com
Motivation: Exploring the potential long noncoding RNA (lncRNA)-disease associations
(LDAs) plays a critical role for understanding disease etiology and pathogenesis. Given the …

Graph neural network with self-supervised learning for noncoding rna–drug resistance association prediction

J Zheng, Y Qian, J He, Z Kang… - Journal of Chemical …, 2022 - ACS Publications
Noncoding RNA (ncRNA) is closely related to drug resistance. Identifying the association
between ncRNA and drug resistance is of great significance for drug development. Methods …

[HTML][HTML] Meta-path guided graph attention network for explainable herb recommendation

Y Jin, W Ji, Y Shi, X Wang, X Yang - Health Information Science and …, 2023 - Springer
Abstract Traditional Chinese Medicine (TCM) has been widely adopted in clinical practice by
Eastern Asia people for thousands of years. Nowadays, TCM still plays a critical role in …