Invited review: Genome-wide association analysis for quantitative traits in livestock–a selective review of statistical models and experimental designs
M Schmid, J Bennewitz - Archives Animal Breeding, 2017 - aab.copernicus.org
Quantitative or complex traits are controlled by many genes and environmental factors. Most
traits in livestock breeding are quantitative traits. Mapping genes and causative mutations …
traits in livestock breeding are quantitative traits. Mapping genes and causative mutations …
Improved prediction of bacterial genotype-phenotype associations using interpretable pangenome-spanning regressions
Discovery of genetic variants underlying bacterial phenotypes and the prediction of
phenotypes such as antibiotic resistance are fundamental tasks in bacterial genomics …
phenotypes such as antibiotic resistance are fundamental tasks in bacterial genomics …
[HTML][HTML] Genome-wide association studies of mineral content in common bean
Micronutrient malnutrition is one of the main public health problems in many parts of the
world. This problem raises the attention of all valuable sources of micronutrients for the …
world. This problem raises the attention of all valuable sources of micronutrients for the …
Genome wide association study of body weight and feed efficiency traits in a commercial broiler chicken population, a re-visitation
W Mebratie, H Reyer, K Wimmers, H Bovenhuis… - Scientific reports, 2019 - nature.com
Genome wide association study was conducted using a mixed linear model (MLM)
approach that accounted for family structure to identify single nucleotide polymorphisms …
approach that accounted for family structure to identify single nucleotide polymorphisms …
A multiple-trait Bayesian Lasso for genome-enabled analysis and prediction of complex traits
D Gianola, RL Fernando - Genetics, 2020 - academic.oup.com
A multiple-trait Bayesian LASSO (MBL) for genome-based analysis and prediction of
quantitative traits is presented and applied to two real data sets. The data-generating model …
quantitative traits is presented and applied to two real data sets. The data-generating model …
Genome-Wide Association Study for Milk Fatty Acids in Holstein Cattle Accounting for the DGAT1 Gene Effect
Simple Summary Milk fat content and fatty acid composition are key traits for the dairy
industry, as they directly influence consumer acceptance of dairy products and are …
industry, as they directly influence consumer acceptance of dairy products and are …
Fast algorithms for conducting large-scale GWAS of age-at-onset traits using cox mixed-effects models
L He, AM Kulminski - Genetics, 2020 - academic.oup.com
Age-at-onset traits are of paramount importance in studies of age-related diseases and
behavioral genetics. Cox mixed-effects models (CMEMs) are widely used when sample …
behavioral genetics. Cox mixed-effects models (CMEMs) are widely used when sample …
[HTML][HTML] Including phenotypic causal networks in genome-wide association studies using mixed effects structural equation models
M Momen, A Ayatollahi Mehrgardi… - Frontiers in …, 2018 - frontiersin.org
Network based statistical models accounting for putative causal relationships among
multiple phenotypes can be used to infer single-nucleotide polymorphism (SNP) effect which …
multiple phenotypes can be used to infer single-nucleotide polymorphism (SNP) effect which …
[HTML][HTML] Prediction of complex traits: robust alternatives to best linear unbiased prediction
A widely used method for prediction of complex traits in animal and plant breeding is
“genomic best linear unbiased prediction”(GBLUP). In a quantitative genetics setting, BLUP …
“genomic best linear unbiased prediction”(GBLUP). In a quantitative genetics setting, BLUP …
WhoGEM: an admixture-based prediction machine accurately predicts quantitative functional traits in plants
The explosive growth of genomic data provides an opportunity to make increased use of
sequence variations for phenotype prediction. We have developed a prediction machine for …
sequence variations for phenotype prediction. We have developed a prediction machine for …