Recent Advances in Assembly of Complex Plant Genomes

W Kong, Y Wang, S Zhang, J Yu… - Genomics, Proteomics & …, 2023 - academic.oup.com
Over the past 20 years, tremendous advances in sequencing technologies and
computational algorithms have spurred plant genomic research into a thriving era with …

The distribution of sexual function in the flowering plant: from monoecy to dioecy

Q Cronk - … Transactions of the Royal Society B, 2022 - royalsocietypublishing.org
In flowering plants, male and female functions are usually closely associated in the same
flowers, as predicted by resource allocation theory. However, the benefits of outbreeding …

[HTML][HTML] Rootstock-mediated genetic variance in cadmium uptake by juvenile cacao (Theobroma cacao L.) genotypes, and its effect on growth and physiology

J Fernández-Paz, AJ Cortés… - Frontiers in Plant …, 2021 - frontiersin.org
Grafting typically offers a shortcut to breed tree orchards throughout a multidimensional
space of traits. Despite an overwhelming spectrum of rootstock-mediated effects on scion …

[HTML][HTML] Repeated turnovers keep sex chromosomes young in willows

D Wang, Y Li, M Li, W Yang, X Ma, L Zhang, Y Wang… - Genome biology, 2022 - Springer
Background Salicaceae species have diverse sex determination systems and frequent sex
chromosome turnovers. However, compared with poplars, the diversity of sex determination …

[HTML][HTML] The spinach YY genome reveals sex chromosome evolution, domestication, and introgression history of the species

X Ma, L Yu, M Fatima, WH Wadlington… - Genome biology, 2022 - Springer
Abstract Background Spinach (Spinacia oleracea L.) is a dioecious species with an XY sex
chromosome system, but its Y chromosome has not been fully characterized. Our knowledge …

[PDF][PDF] Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system

M Iwasaki, T Kajiwara, Y Yasui, Y Yoshitake… - Current Biology, 2021 - cell.com
Sex determination is a central process for sexual reproduction and is often regulated by a
sex determinant encoded on a sex chromosome. Rules that govern the evolution of sex …

Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis

F Saul, M Scharmann, T Wakatake, S Rajaraman… - Nature plants, 2023 - nature.com
Subgenome dominance after whole-genome duplication generates distinction in gene
number and expression at the level of chromosome sets, but it remains unclear how this …

A chromosome‐level Populus qiongdaoensis genome assembly provides insights into tropical adaptation and a cryptic turnover of sex determination

Y Li, D Wang, W Wang, W Yang, J Gao… - Molecular …, 2023 - Wiley Online Library
Populus species have long been used as model organisms to study the adaptability of trees
and the evolution of sex chromosomes. As a species belonging to the section Populus and …

Heterogeneous histories of recombination suppression on stickleback sex chromosomes

JM Sardell, MP Josephson, AC Dalziel… - Molecular biology …, 2021 - academic.oup.com
How consistent are the evolutionary trajectories of sex chromosomes shortly after they form?
Insights into the evolution of recombination, differentiation, and degeneration can be …

[PDF][PDF] Representing sex chromosomes in genome assemblies

SB Carey, JT Lovell, J Jenkins, J Leebens-Mack… - Cell Genomics, 2022 - cell.com
Sex chromosomes have evolved hundreds of independent times across eukaryotes. As
genome sequencing, assembly, and scaffolding techniques rapidly improve, it is now …