Fungal community analysis by high‐throughput sequencing of amplified markers–a user's guide
BD Lindahl, RH Nilsson, L Tedersoo… - New …, 2013 - Wiley Online Library
Novel high‐throughput sequencing methods outperform earlier approaches in terms of
resolution and magnitude. They enable identification and relative quantification of …
resolution and magnitude. They enable identification and relative quantification of …
[HTML][HTML] DNA sequence-based identification of Fusarium: Current status and future directions
Fusarium ranks as one of the world's most economically destructive and species-rich groups
of mycotoxigenic plant pathogens (Aoki et al. 2014). These ubiquitous molds produce a …
of mycotoxigenic plant pathogens (Aoki et al. 2014). These ubiquitous molds produce a …
Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing …
J Bengtsson‐Palme, M Ryberg… - Methods in ecology …, 2013 - Wiley Online Library
The nuclear ribosomal internal transcribed spacer (ITS) region is the primary choice for
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …
molecular identification of fungi. Its two highly variable spacers (ITS 1 and ITS 2) are usually …
DNA Sequence-Based Identification of Fusarium: A Work in Progress
Accurate species-level identification of an etiological agent is crucial for disease diagnosis
and management because knowing the agent's identity connects it with what is known about …
and management because knowing the agent's identity connects it with what is known about …
IDphy: An International Online Resource for Molecular and Morphological Identification of Phytophthora
Phytophthora, with 203 species, is a genus of high importance in agriculture worldwide.
Here, we present the online resource “IDphy”, developed to facilitate the correct …
Here, we present the online resource “IDphy”, developed to facilitate the correct …
[HTML][HTML] One stop shop: backbones trees for important phytopathogenic genera: I (2014)
Many fungi are pathogenic on plants and cause significant damage in agriculture and
forestry. They are also part of the natural ecosystem and may play a role in regulating plant …
forestry. They are also part of the natural ecosystem and may play a role in regulating plant …
[HTML][HTML] Bioinoculants—natural biological resources for sustainable plant production
Agricultural sustainability is of foremost importance for maintaining high food production.
Irresponsible resource use not only negatively affects agroecology, but also reduces the …
Irresponsible resource use not only negatively affects agroecology, but also reduces the …
[HTML][HTML] An expanded phylogeny for the genus Phytophthora
A comprehensive phylogeny representing 142 described and 43 provisionally named
Phytophthora species is reported here for this rapidly expanding genus. This phylogeny …
Phytophthora species is reported here for this rapidly expanding genus. This phylogeny …
[HTML][HTML] The unbearable lightness of sequenced-based identification
Using the basic GenBank local alignment search tool program (BLAST) to identify fungi
collected in a recently protected beech forest at Montricher (Switzerland), the number of ITS …
collected in a recently protected beech forest at Montricher (Switzerland), the number of ITS …
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts
The nuclear ribosomal internal transcribed spacer (ITS) region is the most commonly chosen
genetic marker for the molecular identification of fungi in environmental sequencing and …
genetic marker for the molecular identification of fungi in environmental sequencing and …