Integrated single-cell transcriptomics of cerebrospinal fluid cells in treatment-naïve multiple sclerosis

F Straeten, J Zhu, AL Börsch, B Zhang, K Li… - Journal of …, 2022 - Springer
Multiple sclerosis (MS) is a chronic and often disabling autoimmune disease of the central
nervous system (CNS). Cerebrospinal fluid (CSF) surrounds and protects the CNS. Analysis …

Learning shared neural manifolds from multi-subject FMRI data

J Huang, E Busch, T Wallenstein… - 2022 IEEE 32nd …, 2022 - ieeexplore.ieee.org
Functional magnetic resonance imaging (fMRI) data is collected in millions of noisy,
redundant dimensions. To understand how different brains process the same stimulus, we …

Joint analysis reveals shared autoimmune disease associations and identifies common mechanisms

MR Lincoln, N Connally, PP Axisa, C Gasperi… - medRxiv, 2021 - medrxiv.org
Autoimmune and inflammatory diseases are polygenic disorders of the immune system.
Many genomic loci harbor risk alleles for several diseases, but the limited resolution of …

[HTML][HTML] HIV-1–infected T cell clones are shared across cerebrospinal fluid and blood during ART

M Wang, J Yoon, H Reisert, B Das, B Orlinick… - JCI insight, 2024 - ncbi.nlm.nih.gov
The central nervous system HIV reservoir is incompletely understood and is a major barrier
to HIV cure. We profiled people with HIV (PWH) and uninfected controls through single-cell …

A novel graph-based k-partitioning approach improves the detection of gene-gene correlations by single-cell RNA sequencing

H Xu, Y Hu, X Zhang, BE Aouizerat, C Yan, K Xu - BMC genomics, 2022 - Springer
Background Gene expression is regulated by transcription factors, cofactors, and epigenetic
mechanisms. Coexpressed genes indicate similar functional categories and gene networks …

CSF-resident CD4+ T-cells display a distinct gene expression profile with relevance to immune surveillance and multiple sclerosis

J Hrastelj, R Andrews, S Loveless, J Morgan… - Brain …, 2021 - academic.oup.com
The CNS has traditionally been considered an immune privileged site, but is now
understood to have a system of immune surveillance, predominantly involving CD4+ T-cells …

[HTML][HTML] Current Knowledge about CD3+CD20+ T Cells in Patients with Multiple Sclerosis

B Arneth - International Journal of Molecular Sciences, 2024 - mdpi.com
Multiple sclerosis (MS) is a disease of the central nervous system (CNS) characterized by
inflammation and autoimmune responses. This review explores the participation of T cells …

Integrated analysis and identification of CSF-derived risk miRNAs and pivotal genes in multiple sclerosis

Y Su, Z Li, X Rang, Y Wang, J Fu - Journal of Molecular Neuroscience, 2022 - Springer
Multiple sclerosis (MS) is a common chronic autoimmune disorder of the central nervous
system that predominantly affects young adults. Mounting evidence indicates that …

[HTML][HTML] Single-cell multiomics in neuroinflammation

F Ingelfinger, E Beltrán, LA Gerdes, B Becher - Current Opinion in …, 2022 - Elsevier
Highlights•Advances in multiomics expand the modalities that can be detected in single
cells.•Single-cell omics truly unravel the complexity of the immune system.•Transitioning into …

Single-Cell Transcriptomic Analyses of Brain Parenchyma in Patients With New-Onset Refractory Status Epilepticus (NORSE)

A Hanin, L Zhang, AJ Huttner, I Plu… - Neurology …, 2024 - AAN Enterprises
Background and Objectives New-onset refractory status epilepticus (NORSE) occurs in
previously healthy children or adults, often followed by refractory epilepsy and poor …