Development of a Growth-Dependent System to Regulate Cell Growth and Keratinase Production in B. subtilis

C Su, JS Gong, ZX Wu, YL Liu, H Li… - Journal of Agricultural …, 2023 - ACS Publications
Keratinases specifically degrade insoluble keratin waste, thus contributing to environmental
protection and sustainable biomass development. However, their industrial application is …

Alteration of DNA supercoiling serves as a trigger of short-term cold shock repressed genes of E. coli

S Dash, CSD Palma, ISC Baptista… - Nucleic Acids …, 2022 - academic.oup.com
Cold shock adaptability is a key survival skill of gut bacteria of warm-blooded animals.
Escherichia coli cold shock responses are controlled by a complex multi-gene, timely …

Deep-learning–assisted Sort-Seq enables high-throughput profiling of gene expression characteristics with high precision

H Feng, F Li, T Wang, X Xing, A Zeng, C Zhang - Science Advances, 2023 - science.org
Owing to the nondeterministic and nonlinear nature of gene expression, the steady-state
intracellular protein abundance of a clonal population forms a distribution. The …

A library of reporters of the global regulators of gene expression in Escherichia coli

S Dash, R Jagadeesan, ISC Baptista, V Chauhan… - Msystems, 2024 - Am Soc Microbiol
The topology of the transcription factor network (TFN) of Escherichia coli is far from uniform,
with 22 global regulator (GR) proteins controlling one-third of all genes. So far, their …

Transcription Attenuation in Synthetic Promoters in Nonoverlapping Tandem Formation

V Chauhan, ISC Baptista, AM Arsh, R Jagadeesan… - Biochemistry, 2024 - ACS Publications
Closely spaced promoters are ubiquitous in prokaryotic and eukaryotic genomes. How their
structure and dynamics relate remains unclear, particularly for tandem formations. To study …

The transcription factor network of E. coli steers global responses to shifts in RNAP concentration

B LB Almeida, MN M. Bahrudeen… - Nucleic Acids …, 2022 - academic.oup.com
The robustness and sensitivity of gene networks to environmental changes is critical for cell
survival. How gene networks produce specific, chronologically ordered responses to …

厌氧表达乳酸脱氢酶以提高大肠杆菌产D-乳酸光学纯度

王周, 余杰, 王金华, 王永泽, 赵筱 - 生物技术通报, 2024 - biotech.aiijournal.com
[目的] 为解决在D-乳酸工业发酵生产中使用农业粗加工或废弃物等廉价原料(含有少量L-乳酸)
而导致终产物D-乳酸光纯降低的问题.[方法] 构建了带有不同启动子的L-乳酸脱氢酶基因lldD …

The emergence and evolution of gene expression in genome regions replete with regulatory motifs

T Fuqua, Y Sun, A Wagner - bioRxiv, 2024 - biorxiv.org
Gene regulation is essential for life and controlled by regulatory DNA. Mutations can modify
the activity of regulatory DNA, and also create new regulatory DNA, a process called …

Transcription attenuation in synthetic promoters in tandem formation

V Chauhan, ISC Baptista, R Jagadeesan, S Dash… - bioRxiv, 2023 - biorxiv.org
Closely spaced promoters are ubiquitous in prokaryotic and eukaryotic genomes. How their
structure and dynamics relate remains unclear, particularly for tandem formations. To study …

[PDF][PDF] THE DYNAMICS OF GENE TRANSCRIPTION INDUCED BY VARIATION IN TRANSCRIPTION KINETICS

H Fang, Q Sun - Journal of Applied Analysis & Computation, 2023 - jaac-online.com
In single cells, the process of gene transcription generally demonstrates complicated and
stochastic behaviors. The stochasticity of transcription brings about large variations in the …