Crop phenomics and high-throughput phenotyping: past decades, current challenges, and future perspectives

W Yang, H Feng, X Zhang, J Zhang, JH Doonan… - Molecular plant, 2020 - cell.com
Since whole-genome sequencing of many crops has been achieved, crop functional
genomics studies have stepped into the big-data and high-throughput era. However …

Salt stress under the scalpel–dissecting the genetics of salt tolerance

MJL Morton, M Awlia, N Al‐Tamimi, S Saade… - The Plant …, 2019 - Wiley Online Library
Salt stress limits the productivity of crops grown under saline conditions, leading to
substantial losses of yield in saline soils and under brackish and saline irrigation. Salt …

Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

C Fang, Y Ma, S Wu, Z Liu, Z Wang, R Yang, G Hu… - Genome biology, 2017 - Springer
Abstract Background Soybean (Glycine max [L.] Merr.) is one of the most important oil and
protein crops. Ever-increasing soybean consumption necessitates the improvement of …

Open access resources for genome-wide association mapping in rice

SR McCouch, MH Wright, CW Tung, LG Maron… - Nature …, 2016 - nature.com
Increasing food production is essential to meet the demands of a growing human
population, with its rising income levels and nutritional expectations. To address the …

[HTML][HTML] Advanced high-throughput plant phenotyping techniques for genome-wide association studies: A review

Q Xiao, X Bai, C Zhang, Y He - Journal of advanced research, 2022 - Elsevier
Background Linking phenotypes and genotypes to identify genetic architectures that
regulate important traits is crucial for plant breeding and the development of plant genomics …

Salinity tolerance loci revealed in rice using high-throughput non-invasive phenotyping

N Al-Tamimi, C Brien, H Oakey, B Berger… - Nature …, 2016 - nature.com
High-throughput phenotyping produces multiple measurements over time, which require
new methods of analyses that are flexible in their quantification of plant growth and …

Genome-wide association studies: assessing trait characteristics in model and crop plants

S Alseekh, D Kostova, M Bulut, AR Fernie - Cellular and Molecular Life …, 2021 - Springer
GWAS involves testing genetic variants across the genomes of many individuals of a
population to identify genotype–phenotype association. It was initially developed and has …

Genotype by environment interactions in forest tree breeding: review of methodology and perspectives on research and application

Y Li, M Suontama, RD Burdon, HS Dungey - Tree Genetics & Genomes, 2017 - Springer
Genotype by environment interaction (G× E) refers to the comparative performances of
genotypes differing among environments, representing differences in genotype rankings or …

Next-generation sequencing accelerates crop gene discovery

K Le Nguyen, A Grondin, B Courtois, P Gantet - Trends in plant science, 2019 - cell.com
The identification and isolation of genes underlying quantitative trait loci (QTLs) associated
with agronomic traits in crops have been recently accelerated thanks to next-generation …

Genome-wide association studies of image traits reveal genetic architecture of drought resistance in rice

Z Guo, W Yang, Y Chang, X Ma, H Tu, F Xiong, N Jiang… - Molecular Plant, 2018 - cell.com
Understanding how plants respond to drought can benefit drought resistance (DR) breeding.
Using a non-destructive phenotyping facility, 51 image-based traits (i-traits) for 507 rice …