Approximate Bayesian computation (ABC) in practice

K Csilléry, MGB Blum, OE Gaggiotti… - Trends in ecology & …, 2010 - cell.com
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …

Climate refugia: joint inference from fossil records, species distribution models and phylogeography

DG Gavin, MC Fitzpatrick, PF Gugger… - New …, 2014 - Wiley Online Library
Climate refugia, locations where taxa survive periods of regionally adverse climate, are
thought to be critical for maintaining biodiversity through the glacial–interglacial climate …

DIYABC v2. 0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and …

JM Cornuet, P Pudlo, J Veyssier, A Dehne-Garcia… - …, 2014 - academic.oup.com
Motivation: DIYABC is a software package for a comprehensive analysis of population
history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 …

Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication

Y Zhou, M Massonnet, JS Sanjak… - Proceedings of the …, 2017 - National Acad Sciences
We gathered genomic data from grapes (Vitis vinifera ssp. vinifera), a clonally propagated
perennial crop, to address three ongoing mysteries about plant domestication. The first is the …

[HTML][HTML] Demography and its effects on genomic variation in crop domestication

BS Gaut, DK Seymour, Q Liu, Y Zhou - Nature plants, 2018 - nature.com
Over two thousand plant species have been modified morphologically through cultivation
and human use. Here, we review three aspects of crop domestication that are currently …

Approximate Bayesian computation in evolution and ecology

MA Beaumont - Annual review of ecology, evolution, and …, 2010 - annualreviews.org
In the past 10years a statistical technique, approximate Bayesian computation (ABC), has
been developed that can be used to infer parameters and choose between models in the …

Plant molecular phylogeography in China and adjacent regions: tracing the genetic imprints of Quaternary climate and environmental change in the world's most …

YX Qiu, CX Fu, HP Comes - Molecular phylogenetics and evolution, 2011 - Elsevier
The Sino-Japanese Floristic Region (SJFR) of East Asia harbors the most diverse of the
world's temperate flora, and was the most important glacial refuge for its Tertiary …

On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?

O Mazet, W Rodríguez, S Grusea, S Boitard, L Chikhi - Heredity, 2016 - nature.com
Most species are structured and influenced by processes that either increased or reduced
gene flow between populations. However, most population genetic inference methods …

Using genomic data to infer historic population dynamics of nonmodel organisms

AC Beichman, E Huerta-Sanchez… - Annual Review of …, 2018 - annualreviews.org
Genome sequence data are now being routinely obtained from many nonmodel organisms.
These data contain a wealth of information about the demographic history of the populations …

[图书][B] Molecular ecology

JR Freeland - 2020 - books.google.com
A fully updated guide to the increasingly prevalent use of molecular data in ecological
studies Molecular ecology is concerned with how molecular biology and population genetics …