Approximate Bayesian computation (ABC) in practice
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …
been a major objective of evolutionary biologists for decades. Motivated by the growth in …
Climate refugia: joint inference from fossil records, species distribution models and phylogeography
DG Gavin, MC Fitzpatrick, PF Gugger… - New …, 2014 - Wiley Online Library
Climate refugia, locations where taxa survive periods of regionally adverse climate, are
thought to be critical for maintaining biodiversity through the glacial–interglacial climate …
thought to be critical for maintaining biodiversity through the glacial–interglacial climate …
DIYABC v2. 0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and …
JM Cornuet, P Pudlo, J Veyssier, A Dehne-Garcia… - …, 2014 - academic.oup.com
Motivation: DIYABC is a software package for a comprehensive analysis of population
history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 …
history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 …
Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication
Y Zhou, M Massonnet, JS Sanjak… - Proceedings of the …, 2017 - National Acad Sciences
We gathered genomic data from grapes (Vitis vinifera ssp. vinifera), a clonally propagated
perennial crop, to address three ongoing mysteries about plant domestication. The first is the …
perennial crop, to address three ongoing mysteries about plant domestication. The first is the …
[HTML][HTML] Demography and its effects on genomic variation in crop domestication
Over two thousand plant species have been modified morphologically through cultivation
and human use. Here, we review three aspects of crop domestication that are currently …
and human use. Here, we review three aspects of crop domestication that are currently …
Approximate Bayesian computation in evolution and ecology
MA Beaumont - Annual review of ecology, evolution, and …, 2010 - annualreviews.org
In the past 10years a statistical technique, approximate Bayesian computation (ABC), has
been developed that can be used to infer parameters and choose between models in the …
been developed that can be used to infer parameters and choose between models in the …
Plant molecular phylogeography in China and adjacent regions: tracing the genetic imprints of Quaternary climate and environmental change in the world's most …
YX Qiu, CX Fu, HP Comes - Molecular phylogenetics and evolution, 2011 - Elsevier
The Sino-Japanese Floristic Region (SJFR) of East Asia harbors the most diverse of the
world's temperate flora, and was the most important glacial refuge for its Tertiary …
world's temperate flora, and was the most important glacial refuge for its Tertiary …
On the importance of being structured: instantaneous coalescence rates and human evolution—lessons for ancestral population size inference?
Most species are structured and influenced by processes that either increased or reduced
gene flow between populations. However, most population genetic inference methods …
gene flow between populations. However, most population genetic inference methods …
Using genomic data to infer historic population dynamics of nonmodel organisms
AC Beichman, E Huerta-Sanchez… - Annual Review of …, 2018 - annualreviews.org
Genome sequence data are now being routinely obtained from many nonmodel organisms.
These data contain a wealth of information about the demographic history of the populations …
These data contain a wealth of information about the demographic history of the populations …
[图书][B] Molecular ecology
JR Freeland - 2020 - books.google.com
A fully updated guide to the increasingly prevalent use of molecular data in ecological
studies Molecular ecology is concerned with how molecular biology and population genetics …
studies Molecular ecology is concerned with how molecular biology and population genetics …