Phages shape microbial dynamics and metabolism of a model community mimicking cider, a fermented beverage

P Ledormand, N Desmasures, M Schlusselhuber… - Viruses, 2022 - mdpi.com
Model microbial communities are often studied to better understand interactions and fluxes
during fermentation processes. However, models that take into account the potential impact …

Eco-evolutionary dynamics in microbial communities from spontaneous fermented foods

AY Alekseeva, AE Groenenboom, EJ Smid… - International Journal of …, 2021 - mdpi.com
Eco-evolutionary forces are the key drivers of ecosystem biodiversity dynamics. This
resulted in a large body of theory, which has partially been experimentally tested by …

The expanding computational toolbox for engineering microbial phenotypes at the genome scale

DC Zielinski, A Patel, BO Palsson - Microorganisms, 2020 - mdpi.com
Microbial strains are being engineered for an increasingly diverse array of applications, from
chemical production to human health. While traditional engineering disciplines are driven by …

Developments in effective use of volatile organic compound analysis to assess flavour formation during cheese ripening

M Yavuz, C Kasavi, ET Öner - Journal of Dairy Research, 2021 - cambridge.org
In the burgeoning demand for optimization of cheese production, ascertaining cheese
flavour formation during the cheese making process has been the focal point of determining …

A Species-Specific qPCR Method for Enumeration of Lactobacillus sanfranciscensis, Lactobacillus brevis, and Lactobacillus curvatus During Cocultivation in …

HW Baek, SA Kim, WK Min, SD Kang, S Shim… - Food Analytical …, 2021 - Springer
Lactobacillus sanfranciscensis, Lactobacillus brevis, and Lactobacillus curvatus are
frequently isolated from cereal-based fermented foods and are the dominant lactic acid …

A mixture design approach to develop new starter formulation for Lben: Key aroma compounds, physical, chemical and sensory properties of the product

ST Sarhir, R Belkhou, A Bouseta… - International Dairy Journal, 2024 - Elsevier
The study investigated the evolution of the physicochemical and sensory properties of Lben
fermented milk inoculated with different starter formulations. The aim was to determine the …

[HTML][HTML] Algorithm of spatial–temporal simulation for environment–strain interactions in strain–strain consortia based on resource competition mechanism

C Yang, B Xue, Q Yuan, S Wang, H Su - Computational and Structural …, 2024 - Elsevier
Interaction simulation for co-culture systems is important for optimizing culture conditions
and improving yields. For industrial production, the environment significantly affects the …

A digital twin of bacterial metabolism during cheese production

M Lecomte, W Cao, J Aubert, DJ Sherman, H Falentin… - bioRxiv, 2023 - biorxiv.org
Cheese organoleptic properties result from complex metabolic processes occurring in
microbial communities. A deeper understanding of such mechanisms makes it possible to …

Metabolic modeling of microorganisms and dynamics of microbial communities in the food industry

SNM Farías - 2024 - research.vu.nl
In this thesis, we initially evaluated a wide range of reconstruction tools to determine their
optimal performance in various cases. By utilizing the appropriate reconstruction tools, we …

Proteome trade-off between primary and secondary metabolism shapes acid stress induced bacterial exopolysaccharide production

S Qiu, A Yang, X Yang, W Li, H Zeng, Y Wang - bioRxiv, 2024 - biorxiv.org
The exopolysaccharide (EPS) produced by Lactiplantibacillus plantarum is a high-value
bioproduct in food and health industries, and its biosynthesis has been found as a …