The plant epitranscriptome: revisiting pseudouridine and 2′‐O‐methyl RNA modifications

M Ramakrishnan, KS Rajan… - Plant Biotechnology …, 2022 - Wiley Online Library
There is growing evidence that post‐transcriptional RNA modifications are highly dynamic
and can be used to improve crop production. Although more than 172 unique types of RNA …

Accurate RNA 5-methylcytosine site prediction based on heuristic physical-chemical properties reduction and classifier ensemble

M Zhang, Y Xu, L Li, Z Liu, X Yang, DJ Yu - Analytical biochemistry, 2018 - Elsevier
Abstract RNA 5-methylcytosine (m 5 C) is an important post-transcriptional modification that
plays an indispensable role in biological processes. The accurate identification of m 5 C …

Untranslated yet indispensable—UTRs act as key regulators in the environmental control of gene expression

EC Hardy, M Balcerowicz - Journal of Experimental Botany, 2024 - academic.oup.com
To survive and thrive in a dynamic environment, plants must continuously monitor their
surroundings and adjust their development and physiology accordingly. Changes in gene …

[HTML][HTML] CUCUME: An RNA methylation database integrating systemic mRNAs signals, GWAS and QTL genetic regulation and epigenetics in different tissues of …

X Li, S Lin, C Xiang, W Liu, X Zhang, C Wang… - Computational and …, 2023 - Elsevier
As an internal modification of transcripts, RNA methylation determines RNA fate by changing
RNA–protein binding affinity. In plants, RNA methylation is ubiquitous and is involved in all …

In search of the mRNA modification landscape in plants

J Chmielowska-Bąk, M Arasimowicz-Jelonek… - BMC Plant …, 2019 - Springer
Background Precise regulation of gene expression is indispensable for the proper
functioning of organisms in both optimal and challenging conditions. The most commonly …

The epitranscriptome of long noncoding RNAs in metabolic diseases

L Yin, X Zhu, P Novák, L Zhou, L Gao, M Yang… - Clinica Chimica …, 2021 - Elsevier
Long noncoding RNAs (lncRNAs) have abundant content and extensive functions that
regulate the expression of genes at multiple levels. Recently, transcriptome-wide analysis …

New insights into the plant epitranscriptome

LE Vandivier, BD Gregory - Journal of experimental botany, 2018 - academic.oup.com
Throughout all kingdoms of life, ribonucleotides are marked with covalent chemical
modifications that change the structure and binding properties of modified RNA molecules …

Epitranscriptomic 5-Methylcytosine Profile in PM2.5-Induced Mouse Pulmonary Fibrosis

X Han, H Liu, Z Zhang, W Yang, C Wu… - Genomics …, 2020 - academic.oup.com
Exposure of airborne particulate matter (PM) with an aerodynamic diameter less than 2.5 μm
(PM2. 5) is epidemiologically associated with lung dysfunction and respiratory symptoms …

[HTML][HTML] Emerging role of dynamic RNA modifications during animal development

E Sánchez-Vásquez, NA Jimenez, NA Vázquez… - Mechanisms of …, 2018 - Elsevier
The central dogma of molecular biology statically says that the information flows from DNA to
messenger RNA to protein. But the recent advances in mass spectrometry and high …

DNA and coding/non‐coding RNA methylation analysis provide insights into tomato fruit ripening

S Guo, Y Zheng, D Meng, X Zhao, Z Sang… - The Plant …, 2022 - Wiley Online Library
Ripening is the last, irreversible developmental stage during which fruit become palatable,
thus promoting seed dispersal by frugivory. In Alisa Craig fruit, mRNAs with increasing m5C …