[HTML][HTML] Diversity in EWAS: current state, challenges, and solutions

CE Breeze, JYY Wong, S Beck, SI Berndt… - Genome Medicine, 2022 - Springer
Here, we report a lack of diversity in epigenome-wide association studies (EWAS) and DNA
methylation (DNAm) data, discuss current challenges, and propose solutions for EWAS and …

[HTML][HTML] Placental multi-omics integration identifies candidate functional genes for birthweight

F Tekola-Ayele, X Zeng, S Chatterjee, M Ouidir… - Nature …, 2022 - nature.com
Abnormal birthweight is associated with increased risk for cardiometabolic diseases in later
life. Although the placenta is critical to fetal development and later life health, it has not been …

[HTML][HTML] Integrative analysis of 3604 GWAS reveals multiple novel cell type-specific regulatory associations

CE Breeze, E Haugen, A Reynolds, A Teschendorff… - Genome biology, 2022 - Springer
Background Genome-wide association study (GWAS) single nucleotide polymorphisms
(SNPs) are known to preferentially co-locate to active regulatory elements in tissues and cell …

[HTML][HTML] An integrative multi-omics analysis to identify candidate DNA methylation biomarkers related to prostate cancer risk

L Wu, Y Yang, X Guo, XO Shu, Q Cai, X Shu… - Nature …, 2020 - nature.com
It remains elusive whether some of the associations identified in genome-wide association
studies of prostate cancer (PrCa) may be due to regulatory effects of genetic variants on …

Pulmonary function and blood DNA methylation: a multiancestry epigenome-wide association meta-analysis

M Lee, T Huan, DL McCartney, G Chittoor… - American Journal of …, 2022 - atsjournals.org
Rationale: Methylation integrates factors present at birth and modifiable across the lifespan
that can influence pulmonary function. Studies are limited in scope and replication …

[HTML][HTML] Genome-wide DNA methylation and long-term ambient air pollution exposure in Korean adults

MK Lee, CJ Xu, MU Carnes, CE Nichols, JM Ward… - Clinical …, 2019 - Springer
Background Ambient air pollution is associated with numerous adverse health outcomes,
but the underlying mechanisms are not well understood; epigenetic effects including altered …

[HTML][HTML] DNA methylation modules associate with incident cardiovascular disease and cumulative risk factor exposure

K Westerman, P Sebastiani, P Jacques, S Liu… - Clinical …, 2019 - Springer
Background Epigenome-wide association studies using DNA methylation have the potential
to uncover novel biomarkers and mechanisms of cardiovascular disease (CVD) risk …

[HTML][HTML] Tobacco smoking induces changes in true DNA methylation, hydroxymethylation and gene expression in bronchoalveolar lavage cells

MV Ringh, M Hagemann-Jensen, M Needhamsen… - …, 2019 - thelancet.com
Background While smoking is known to associate with development of multiple diseases,
the underlying mechanisms are still poorly understood. Tobacco smoking can modify the …

[HTML][HTML] Comprehensive evaluation of smoking exposures and their interactions on DNA methylation

TT Hoang, Y Lee, DL McCartney, ETG Kersten… - …, 2024 - thelancet.com
Background Smoking impacts DNA methylation, but data are lacking on smoking-related
differential methylation by sex or dietary intake, recent smoking cessation (< 1 year) …

High‐resolution mapping of cancer cell networks using co‐functional interactions

EA Boyle, JK Pritchard, WJ Greenleaf - Molecular systems biology, 2018 - embopress.org
Powerful new technologies for perturbing genetic elements have recently expanded the
study of genetic interactions in model systems ranging from yeast to human cell lines …