Modeling epistasis in genomic selection

Y Jiang, JC Reif - Genetics, 2015 - academic.oup.com
Modeling epistasis in genomic selection is impeded by a high computational load. The
extended genomic best linear unbiased prediction (EG-BLUP) with an epistatic relationship …

Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize

JA Poland, PJ Bradbury, ES Buckler… - Proceedings of the …, 2011 - National Acad Sciences
Quantitative resistance to plant pathogens, controlled by multiple loci of small effect, is
important for food production, food security, and food safety but is poorly understood. To …

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

B Brachi, N Faure, M Horton, E Flahauw… - PLoS …, 2010 - journals.plos.org
Flowering time is a key life-history trait in the plant life cycle. Most studies to unravel the
genetics of flowering time in Arabidopsis thaliana have been performed under greenhouse …

A SUPER powerful method for genome wide association study

Q Wang, F Tian, Y Pan, ES Buckler, Z Zhang - PloS one, 2014 - journals.plos.org
Genome-Wide Association Studies shed light on the identification of genes underlying
human diseases and agriculturally important traits. This potential has been shadowed by …

The evening complex promotes maize flowering and adaptation to temperate regions

Y Zhao, B Zhao, Y Xie, H Jia, Y Li, M Xu, G Wu… - The Plant …, 2023 - academic.oup.com
Maize (Zea mays) originated in southern Mexico and has spread over a wide latitudinal
range. Maize expansion from tropical to temperate regions has necessitated a reduction of …

ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize

HY Hung, LM Shannon, F Tian… - Proceedings of the …, 2012 - National Acad Sciences
Teosinte, the progenitor of maize, is restricted to tropical environments in Mexico and
Central America. The pre-Columbian spread of maize from its center of origin in tropical …

Association genetics in crop improvement

JA Rafalski - Current opinion in plant biology, 2010 - Elsevier
Increased availability of high throughput genotyping technology together with advances in
DNA sequencing and in the development of statistical methodology appropriate for genome …

Genomic selection in forest tree breeding

D Grattapaglia, MDV Resende - Tree Genetics & Genomes, 2011 - Springer
Genomic selection (GS) involves selection decisions based on genomic breeding values
estimated as the sum of the effects of genome-wide markers capturing most quantitative trait …

Natural variation in Arabidopsis: from molecular genetics to ecological genomics

D Weigel - Plant physiology, 2012 - academic.oup.com
One of the most remarkable biological insights in the past 30 years has been that many
genetic programs for complex traits, such as flower or limb development, are shared across …

High-throughput phenotyping of seminal root traits in wheat

CAI Richard, LT Hickey, S Fletcher, R Jennings… - Plant Methods, 2015 - Springer
Background Water availability is a major limiting factor for wheat (Triticum aestivum L.)
production in rain-fed agricultural systems worldwide. Root system architecture has …