Integration of spatial and single-cell data across modalities with weakly linked features
Although single-cell and spatial sequencing methods enable simultaneous measurement of
more than one biological modality, no technology can capture all modalities within the same …
more than one biological modality, no technology can capture all modalities within the same …
NAD+ precursor supplementation prevents mtRNA/RIG-I-dependent inflammation during kidney injury
Our understanding of how global changes in cellular metabolism contribute to human kidney
disease remains incompletely understood. Here we show that nicotinamide adenine …
disease remains incompletely understood. Here we show that nicotinamide adenine …
Molecular pathways that drive diabetic kidney disease
Kidney disease is a major driver of mortality among patients with diabetes and diabetic
kidney disease (DKD) is responsible for close to half of all chronic kidney disease cases …
kidney disease (DKD) is responsible for close to half of all chronic kidney disease cases …
Spatial transcriptomics in health and disease
S Jain, MT Eadon - Nature Reviews Nephrology, 2024 - nature.com
The ability to localize hundreds of macromolecules to discrete locations, structures and cell
types in a tissue is a powerful approach to understand the cellular and spatial organization …
types in a tissue is a powerful approach to understand the cellular and spatial organization …
Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists
A Abedini, A Sánchez-Navaro, J Wu… - The Journal of …, 2024 - Am Soc Clin Investig
Mineralocorticoid excess commonly leads to hypertension (HTN) and kidney disease. In our
study, we used single-cell expression and chromatin accessibility tools to characterize the …
study, we used single-cell expression and chromatin accessibility tools to characterize the …
Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions
Existing methods for analysis of spatial transcriptomic data focus on delineating the global
gene expression variations of cell types across the tissue, rather than local gene expression …
gene expression variations of cell types across the tissue, rather than local gene expression …
Transcriptomic, epigenomic, and spatial metabolomic cell profiling redefines regional human kidney anatomy
A large-scale multimodal atlas that includes major kidney regions is lacking. Here, we
employed simultaneous high-throughput single-cell ATAC/RNA sequencing (SHARE-seq) …
employed simultaneous high-throughput single-cell ATAC/RNA sequencing (SHARE-seq) …
Multi-omics analyses identify AKR1A1 as a biomarker for diabetic kidney disease
DF Li, FC Hsu, ND Palmer, L Liu, YA Choi, M Murea… - Diabetes, 2024 - Am Diabetes Assoc
Diabetic kidney disease (DKD) is the leading cause of end-stage kidney disease. As many
genes associate with DKD, multi-omics approaches were employed to narrow the list of …
genes associate with DKD, multi-omics approaches were employed to narrow the list of …
Hypoxia and renal fibrosis
S Naas, M Schiffer, J Schödel - American Journal of …, 2023 - journals.physiology.org
Renal fibrosis is the final stage of most progressive kidney diseases. Chronic kidney disease
(CKD) is associated with high comorbidity and mortality. Thus, preventing fibrosis and …
(CKD) is associated with high comorbidity and mortality. Thus, preventing fibrosis and …
Distinct developmental reprogramming footprint of macrophages during acute kidney injury across species
M Mrug, E Mrug, F Rosenblum… - American Journal …, 2024 - journals.physiology.org
Acute kidney injury (AKI) is a common finding in hospitalized patients, particularly those who
are critically ill. The development of AKI is associated with several adverse outcomes …
are critically ill. The development of AKI is associated with several adverse outcomes …