[HTML][HTML] Coronavirus in water media: analysis, fate, disinfection and epidemiological applications

A Buonerba, MVA Corpuz, F Ballesteros… - Journal of Hazardous …, 2021 - Elsevier
Considerable attention has been recently given to possible transmission of SARS-CoV-2 via
water media. This review addresses this issue and examines the fate of coronaviruses …

[HTML][HTML] Overview of virus metagenomic classification methods and their biological applications

S Nooij, D Schmitz, H Vennema, A Kroneman… - Frontiers in …, 2018 - frontiersin.org
Metagenomics poses opportunities for clinical and public health virology applications by
offering a way to assess complete taxonomic composition of a clinical sample in an …

Epidemiology of the silent polio outbreak in Rahat, Israel, based on modeling of environmental surveillance data

AF Brouwer, JNS Eisenberg… - Proceedings of the …, 2018 - National Acad Sciences
Israel experienced an outbreak of wild poliovirus type 1 (WPV1) in 2013–2014, detected
through environmental surveillance of the sewage system. No cases of acute flaccid …

[HTML][HTML] Biosensors for waterborne virus detection: Challenges and strategies

X Song, Z Fredj, Y Zheng, H Zhang, G Rong… - Journal of …, 2023 - Elsevier
Waterborne viruses that can be harmful to human health pose significant challenges
globally, affecting health care systems and the economy. Identifying these waterborne …

[HTML][HTML] Virus metagenomics in farm animals: a systematic review

KTT Kwok, DF Nieuwenhuijse, MVT Phan… - Viruses, 2020 - mdpi.com
A majority of emerging infectious diseases are of zoonotic origin. Metagenomic Next-
Generation Sequencing (mNGS) has been employed to identify uncommon and novel …

[HTML][HTML] High throughput sequencing for detection of foodborne pathogens

C Sekse, A Holst-Jensen, U Dobrindt… - Frontiers in …, 2017 - frontiersin.org
High-throughput sequencing (HTS) is becoming the state-of-the-art technology for typing of
microbial isolates, especially in clinical samples. Yet, its application is still in its infancy for …

[HTML][HTML] Clinical manifestations of human monkeypox infection and implications for outbreak strategy

N Johri, D Kumar, P Nagar, A Maurya, M Vengat… - Health Sciences …, 2022 - Elsevier
Monkeypox is an orthopoxvirus-based zoonotic illness that causes symptoms similar to
smallpox in humans. Health care workers around the world are making it a priority to …

[HTML][HTML] Setting a baseline for global urban virome surveillance in sewage

DF Nieuwenhuijse, BB Oude Munnink, MVT Phan… - Scientific Reports, 2020 - nature.com
The rapid development of megacities, and their growing connectedness across the world is
becoming a distinct driver for emerging disease outbreaks. Early detection of unusual …

Viromic analysis of wastewater input to a river catchment reveals a diverse assemblage of RNA viruses

EM Adriaenssens, K Farkas, C Harrison, DL Jones… - …, 2018 - Am Soc Microbiol
Detection of viruses in the environment is heavily dependent on PCR-based approaches
that require reference sequences for primer design. While this strategy can accurately detect …

[HTML][HTML] Nanopore-based detection and characterization of yam viruses

D Filloux, E Fernandez, E Loire, L Claude, S Galzi… - Scientific reports, 2018 - nature.com
We here assessed the capability of the MinION sequencing approach to detect and
characterize viruses infecting a water yam plant. This sequencing platform consistently …