SVA retrotransposons and a Low copy repeat in humans and great apes: A Mobile connection
A Damert - Molecular Biology and Evolution, 2022 - academic.oup.com
Segmental duplications (SDs) constitute a considerable fraction of primate genomes. They
contribute to genetic variation and provide raw material for evolution. Groups of SDs are …
contribute to genetic variation and provide raw material for evolution. Groups of SDs are …
A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome
Advances in next-generation sequencing (NGS) technology have made personal genome
sequencing possible, and indeed, many individual human genomes have now been …
sequencing possible, and indeed, many individual human genomes have now been …
[HTML][HTML] The genetic mechanisms driving diversification of the KIR gene cluster in primates
J Bruijnesteijn, NG De Groot, RE Bontrop - Frontiers in Immunology, 2020 - frontiersin.org
The activity and function of natural killer (NK) cells are modulated through the interactions of
multiple receptor families, of which some recognize MHC class I molecules. The high level of …
multiple receptor families, of which some recognize MHC class I molecules. The high level of …
Alu repeats increase local recombination rates
DJ Witherspoon, WS Watkins, Y Zhang, J Xing… - BMC genomics, 2009 - Springer
Background Recombination rates vary widely across the human genome, but little of that
variation is correlated with known DNA sequence features. The genome contains more than …
variation is correlated with known DNA sequence features. The genome contains more than …
Breakpoint characterization of large deletions in EXT1 or EXT2 in 10 Multiple Osteochondromas families
I Jennes, D de Jong, K Mees, PCW Hogendoorn… - BMC Medical …, 2011 - Springer
Background Osteochondromas (cartilage-capped bone tumors) are by far the most
commonly treated of all primary benign bone tumors (50%). In 15% of cases, these tumors …
commonly treated of all primary benign bone tumors (50%). In 15% of cases, these tumors …
[HTML][HTML] An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair
D Srikanta, SK Sen, CT Huang, EM Conlin, RM Rhodes… - Genomics, 2009 - Elsevier
The Alu family is a highly successful group of non-LTR retrotransposons ubiquitously found
in primate genomes. Similar to the L1 retrotransposon family, Alu elements integrate …
in primate genomes. Similar to the L1 retrotransposon family, Alu elements integrate …
Comparative Genomics Analysis Reveals High Levels of Differential Retrotransposition among Primates from the Hominidae and the Cercopithecidae Families
Mobile elements (MEs), making∼ 50% of primate genomes, are known to be responsible for
generating inter-and intra-species genomic variations and play important roles in genome …
generating inter-and intra-species genomic variations and play important roles in genome …
Homozygous deletion of the STK11/LKB1 locus and the generation of novel fusion transcripts in cervical cancer cells
The STK11/LKB1 gene encodes a ubiquitously expressed serine/threonine kinase that is
mutated in multiple sporadic cancers including non-small cell lung carcinomas, pancreatic …
mutated in multiple sporadic cancers including non-small cell lung carcinomas, pancreatic …
Chicken (Gallus gallus) endogenous retrovirus generates genomic variations in the chicken genome
Abstract Background Transposable elements (TEs) comprise~ 10% of the chicken (Gallus
gallus) genome. The content of TEs is much lower than that of mammalian genomes, where …
gallus) genome. The content of TEs is much lower than that of mammalian genomes, where …
Cruciform-forming inverted repeats appear to have mediated many of the microinversions that distinguish the human and chimpanzee genomes
J Kolb, NA Chuzhanova, J Högel, KM Vasquez… - Chromosome …, 2009 - Springer
Submicroscopic inversions have contributed significantly to the genomic divergence
between humans and chimpanzees over evolutionary time. Those microinversions which …
between humans and chimpanzees over evolutionary time. Those microinversions which …