Helicobacter pylori infection and antibiotic resistance — from biology to clinical implications

E Tshibangu-Kabamba, Y Yamaoka - Nature Reviews Gastroenterology …, 2021 - nature.com
Helicobacter pylori is a major human pathogen for which increasing antibiotic resistance
constitutes a serious threat to human health. Molecular mechanisms underlying this …

Genomic-informed pathogen surveillance in Africa: opportunities and challenges

SC Inzaule, SK Tessema, Y Kebede… - The Lancet Infectious …, 2021 - thelancet.com
The ongoing COVID-19 pandemic has highlighted the need to incorporate pathogen
genomics for enhanced disease surveillance and outbreak management in Africa. The …

Advanced molecular and immunological diagnostic methods to detect SARS-CoV-2 infection

JC Rotondo, F Martini, M Maritati, E Caselli… - Microorganisms, 2022 - mdpi.com
Simple Summary COVID-19 emerged in late 2019 in China and rapidly spread across the
globe. After 2 years, numerous advances have been made. First of all, the preventive …

COVID‐19 diagnostic testing: technology perspective

M Xu, D Wang, H Wang, X Zhang… - Clinical and …, 2020 - Wiley Online Library
The corona virus disease 2019 (COVID‐19) is a highly contagious disease caused by the
severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2). More than 18 million …

Antibiotic resistance diagnosis in ESKAPE pathogens—a review on proteomic perspective

S Kalpana, WY Lin, YC Wang, Y Fu, A Lakshmi… - Diagnostics, 2023 - mdpi.com
Antibiotic resistance has emerged as an imminent pandemic. Rapid diagnostic assays
distinguish bacterial infections from other diseases and aid antimicrobial stewardship …

Laboratory diagnostics for human Leishmania infections: a polymerase chain reaction-focussed review of detection and identification methods

I Gow, NC Smith, D Stark, J Ellis - Parasites & Vectors, 2022 - Springer
Leishmania infections span a range of clinical syndromes and impact humans from many
geographic foci, but primarily the world's poorest regions. Transmitted by the bite of a female …

Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description

B Lebas, I Adams, M Al Rwahnih, S Baeyen… - EPPO …, 2022 - Wiley Online Library
High‐throughput sequencing (HTS) is a powerful tool that enables the simultaneous
detection and potential identification of any organisms present in a sample. The growing …

The human “contaminome”: bacterial, viral, and computational contamination in whole genome sequences from 1000 families

B Chrisman, C He, JY Jung, N Stockham, K Paskov… - Scientific Reports, 2022 - nature.com
The unmapped readspace of whole genome sequencing data tends to be large but is often
ignored. We posit that it contains valuable signals of both human infection and …

Real-time nanopore Q20+ sequencing enables extremely fast and accurate core genome MLST typing and democratizes access to high-resolution bacterial pathogen …

GE Wagner, J Dabernig-Heinz, M Lipp… - Journal of Clinical …, 2023 - Am Soc Microbiol
Next-generation whole-genome sequencing is essential for high-resolution surveillance of
bacterial pathogens, for example, during outbreak investigations or for source tracking and …

Detection of respiratory viruses directly from clinical samples using next‐generation sequencing: A literature review of recent advances and potential for routine …

X Wang, S Stelzer‐Braid, M Scotch… - Reviews in Medical …, 2022 - Wiley Online Library
Acute respiratory infection is the third most frequent cause of mortality worldwide, causing
over 4.25 million deaths annually. Although most diagnosed acute respiratory infections are …