[HTML][HTML] A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

[HTML][HTML] Machine learning in plant science and plant breeding

ADJ van Dijk, G Kootstra, W Kruijer, D de Ridder - Iscience, 2021 - cell.com
Technological developments have revolutionized measurements on plant genotypes and
phenotypes, leading to routine production of large, complex data sets. This has led to …

[HTML][HTML] Fundamentals of artificial neural networks and deep learning

OA Montesinos López, A Montesinos López… - … learning methods for …, 2022 - Springer
In this chapter, we go through the fundamentals of artificial neural networks and deep
learning methods. We describe the inspiration for artificial neural networks and how the …

[HTML][HTML] Overfitting, model tuning, and evaluation of prediction performance

OA Montesinos López, A Montesinos López… - … learning methods for …, 2022 - Springer
The overfitting phenomenon happens when a statistical machine learning model learns very
well about the noise as well as the signal that is present in the training data. On the other …

[HTML][HTML] The modern plant breeding triangle: optimizing the use of genomics, phenomics, and enviromics data

J Crossa, R Fritsche-Neto… - Frontiers in plant …, 2021 - frontiersin.org
Continued increases in genetic gain demonstrate the success of established public and
private plant breeding programs. Nevertheless, in the last two decades, a growing body of …

Accelerating climate resilient plant breeding by applying next-generation artificial intelligence

AL Harfouche, DA Jacobson, D Kainer, JC Romero… - Trends in …, 2019 - cell.com
Breeding crops for high yield and superior adaptability to new and variable climates is
imperative to ensure continued food security, biomass production, and ecosystem services …

[HTML][HTML] Harnessing crop wild diversity for climate change adaptation

AJ Cortés, F López-Hernández - Genes, 2021 - mdpi.com
Warming and drought are reducing global crop production with a potential to substantially
worsen global malnutrition. As with the green revolution in the last century, plant genetics …

[HTML][HTML] Enhancing genetic gain through genomic selection: from livestock to plants

Y Xu, X Liu, J Fu, H Wang, J Wang, C Huang… - Plant …, 2020 - cell.com
Although long-term genetic gain has been achieved through increasing use of modern
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …

[HTML][HTML] Deep learning for predicting complex traits in spring wheat breeding program

KS Sandhu, DN Lozada, Z Zhang… - Frontiers in Plant …, 2021 - frontiersin.org
Genomic selection (GS) is transforming the field of plant breeding and implementing models
that improve prediction accuracy for complex traits is needed. Analytical methods for …

[HTML][HTML] A guide on deep learning for complex trait genomic prediction

M Pérez-Enciso, LM Zingaretti - Genes, 2019 - mdpi.com
Deep learning (DL) has emerged as a powerful tool to make accurate predictions from
complex data such as image, text, or video. However, its ability to predict phenotypic values …