[HTML][HTML] A review of deep learning applications for genomic selection
OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …
methods have been proposed including the standard additive genetic effect model for which …
[HTML][HTML] Machine learning in plant science and plant breeding
Technological developments have revolutionized measurements on plant genotypes and
phenotypes, leading to routine production of large, complex data sets. This has led to …
phenotypes, leading to routine production of large, complex data sets. This has led to …
[HTML][HTML] Fundamentals of artificial neural networks and deep learning
OA Montesinos López, A Montesinos López… - … learning methods for …, 2022 - Springer
In this chapter, we go through the fundamentals of artificial neural networks and deep
learning methods. We describe the inspiration for artificial neural networks and how the …
learning methods. We describe the inspiration for artificial neural networks and how the …
[HTML][HTML] Overfitting, model tuning, and evaluation of prediction performance
OA Montesinos López, A Montesinos López… - … learning methods for …, 2022 - Springer
The overfitting phenomenon happens when a statistical machine learning model learns very
well about the noise as well as the signal that is present in the training data. On the other …
well about the noise as well as the signal that is present in the training data. On the other …
[HTML][HTML] The modern plant breeding triangle: optimizing the use of genomics, phenomics, and enviromics data
J Crossa, R Fritsche-Neto… - Frontiers in plant …, 2021 - frontiersin.org
Continued increases in genetic gain demonstrate the success of established public and
private plant breeding programs. Nevertheless, in the last two decades, a growing body of …
private plant breeding programs. Nevertheless, in the last two decades, a growing body of …
Accelerating climate resilient plant breeding by applying next-generation artificial intelligence
Breeding crops for high yield and superior adaptability to new and variable climates is
imperative to ensure continued food security, biomass production, and ecosystem services …
imperative to ensure continued food security, biomass production, and ecosystem services …
[HTML][HTML] Harnessing crop wild diversity for climate change adaptation
AJ Cortés, F López-Hernández - Genes, 2021 - mdpi.com
Warming and drought are reducing global crop production with a potential to substantially
worsen global malnutrition. As with the green revolution in the last century, plant genetics …
worsen global malnutrition. As with the green revolution in the last century, plant genetics …
[HTML][HTML] Enhancing genetic gain through genomic selection: from livestock to plants
Although long-term genetic gain has been achieved through increasing use of modern
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …
breeding methods and technologies, the rate of genetic gain needs to be accelerated to …
[HTML][HTML] Deep learning for predicting complex traits in spring wheat breeding program
Genomic selection (GS) is transforming the field of plant breeding and implementing models
that improve prediction accuracy for complex traits is needed. Analytical methods for …
that improve prediction accuracy for complex traits is needed. Analytical methods for …
[HTML][HTML] A guide on deep learning for complex trait genomic prediction
M Pérez-Enciso, LM Zingaretti - Genes, 2019 - mdpi.com
Deep learning (DL) has emerged as a powerful tool to make accurate predictions from
complex data such as image, text, or video. However, its ability to predict phenotypic values …
complex data such as image, text, or video. However, its ability to predict phenotypic values …