Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
[HTML][HTML] The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …
ipyrad: Interactive assembly and analysis of RADseq datasets
DAR Eaton, I Overcast - Bioinformatics, 2020 - academic.oup.com
Abstract Summary ipyrad is a free and open source tool for assembling and analyzing
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
[HTML][HTML] Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
Mosses are a highly diverse lineage of land plants, whose diversification, spanning at least
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
400 million years, remains phylogenetically ambiguous due to the lack of fossils, massive …
[HTML][HTML] Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of angiosperms
The world's herbaria collectively house millions of diverse plant specimens, including
endangered or extinct species and type specimens. Unlocking genetic data from the …
endangered or extinct species and type specimens. Unlocking genetic data from the …
[HTML][HTML] Tackling rapid radiations with targeted sequencing
In phylogenetic studies across angiosperms, at various taxonomic levels, polytomies have
persisted despite efforts to resolve them by increasing sampling of taxa and loci. The large …
persisted despite efforts to resolve them by increasing sampling of taxa and loci. The large …
Genomic phylogeography illuminates deep cyto-nuclear discordances in midwife toads (Alytes)
J Ambu, Í Martínez-Solano, T Suchan… - Molecular Phylogenetics …, 2023 - Elsevier
The advent of genomic methods allows us to revisit the evolutionary history of organismal
groups for which robust phylogenies are still lacking, particularly in species complexes that …
groups for which robust phylogenies are still lacking, particularly in species complexes that …
Untying Gordian knots: unraveling reticulate polyploid plant evolution by genomic data using the large Ranunculus auricomus species complex
Speciation via hybridization and polyploidization is a major evolutionary force in plant
evolution but is still poorly understood for neopolyploid groups. Challenges are attributed to …
evolution but is still poorly understood for neopolyploid groups. Challenges are attributed to …
[HTML][HTML] Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
Abstract Gesneriaceae (ca. 3400 species) is a pantropical plant family with a wide range of
growth form and floral morphology that are associated with repeated adaptations to different …
growth form and floral morphology that are associated with repeated adaptations to different …