Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

The modern plant breeding triangle: optimizing the use of genomics, phenomics, and enviromics data

J Crossa, R Fritsche-Neto… - Frontiers in plant …, 2021 - frontiersin.org
Continued increases in genetic gain demonstrate the success of established public and
private plant breeding programs. Nevertheless, in the last two decades, a growing body of …

Role of the genomics–phenomics–agronomy paradigm in plant breeding

CJ Chen, J Rutkoski, JC Schnable… - Plant Breeding …, 2022 - Wiley Online Library
Plant breeding primarily focuses on improving agronomy traits, eg yield, quality, host plant
resistance to pathogens and pests, and abiotic stress tolerance; however, the methods for …

Multi-trait multi-environment genomic prediction of agronomic traits in advanced breeding lines of winter wheat

HS Gill, J Halder, J Zhang, NK Brar, TS Rai… - Frontiers in Plant …, 2021 - frontiersin.org
Genomic prediction is a promising approach for accelerating the genetic gain of complex
traits in wheat breeding. However, increasing the prediction accuracy (PA) of genomic …

Data-driven decentralized breeding increases prediction accuracy in a challenging crop production environment

K de Sousa, J van Etten, J Poland, C Fadda… - Communications …, 2021 - nature.com
Crop breeding must embrace the broad diversity of smallholder agricultural systems to
ensure food security to the hundreds of millions of people living in challenging production …

Multi-trait multi-environment genomic prediction for end-use quality traits in winter wheat

KS Sandhu, SS Patil, M Aoun, AH Carter - Frontiers in Genetics, 2022 - frontiersin.org
Soft white wheat is a wheat class used in foreign and domestic markets to make various end
products requiring specific quality attributes. Due to associated cost, time, and amount of …

Multi-trait genomic-enabled prediction enhances accuracy in multi-year wheat breeding trials

A Montesinos-López, DE Runcie, MI Ibba… - G3, 2021 - academic.oup.com
Implementing genomic-based prediction models in genomic selection requires an
understanding of the measures for evaluating prediction accuracy from different models and …

Partial least squares enhances genomic prediction of new environments

OA Montesinos-López, A Montesinos-López… - Frontiers in …, 2022 - frontiersin.org
In plant breeding, the need to improve the prediction of future seasons or new locations
and/or environments, also denoted as “leave one environment out,” is of paramount …

Maintenance of UK bread baking quality: Trends in wheat quality traits over 50 years of breeding and potential for future application of genomic‐assisted selection

NS Fradgley, AR Bentley, KA Gardner… - The Plant …, 2023 - Wiley Online Library
Improved selection of wheat varieties with high end‐use quality contributes to sustainable
food systems by ensuring productive crops are suitable for human consumption end‐uses …

Multi-modal deep learning improves grain yield prediction in wheat breeding by fusing genomics and phenomics

M Togninalli, X Wang, T Kucera, S Shrestha… - …, 2023 - academic.oup.com
Motivation Developing new crop varieties with superior performance is highly important to
ensure robust and sustainable global food security. The speed of variety development is …