Mobilization of a plant transposon by expression of the transposon‐encoded anti‐silencing factor

Y Fu, A Kawabe, M Etcheverry, T Ito, A Toyoda… - The EMBO …, 2013 - embopress.org
Transposable elements (TEs) have a major impact on genome evolution, but they are
potentially deleterious, and most of them are silenced by epigenetic mechanisms, such as …

Genome-wide negative feedback drives transgenerational DNA methylation dynamics in Arabidopsis

T Ito, Y Tarutani, TK To, M Kassam… - PLoS …, 2015 - journals.plos.org
Epigenetic variations of phenotypes, especially those associated with DNA methylation, are
often inherited over multiple generations in plants. The active and inactive chromatin states …

LTR retrotransposons show low levels of unequal recombination and high rates of intraelement gene conversion in large plant genomes

RM Cossu, C Casola, S Giacomello… - Genome Biology and …, 2017 - academic.oup.com
The accumulation and removal of transposable elements (TEs) is a major driver of genome
size evolution in eukaryotes. In plants, long terminal repeat (LTR) retrotransposons (LTR …

Control of meiotic recombination frequency in plant genomes

IR Henderson - Current opinion in plant biology, 2012 - Elsevier
Sexual eukaryotes reproduce via the meiotic cell division, where ploidy is halved and
homologous chromosomes undergo reciprocal genetic exchange, termed crossover (CO) …

DNA damage repair in the context of plant chromatin

M Donà, O Mittelsten Scheid - Plant physiology, 2015 - academic.oup.com
The integrity of DNA molecules is constantly challenged. All organisms have developed
mechanisms to detect and repair multiple types of DNA lesions. The basic principles of DNA …

The number of meiotic double-strand breaks influences crossover distribution in Arabidopsis

M Xue, J Wang, L Jiang, M Wang, S Wolfe… - The Plant …, 2018 - academic.oup.com
Meiotic recombination generates genetic diversity and ensures proper chromosome
segregation. Recombination is initiated by the programmed formation of double-strand …

Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map

R Kooke, L Morgado, F Becker, H van Eekelen… - Genome …, 2019 - genome.cshlp.org
Identifying the sources of natural variation underlying metabolic differences between plants
will enable a better understanding of plant metabolism and provide insights into the …

Tinkering with meiosis

W Crismani, C Girard, R Mercier - Journal of experimental …, 2013 - academic.oup.com
Meiosis is at the heart of Mendelian heredity. Recently, much progress has been made in
the understanding of this process, in various organisms. In the last 15 years, the functional …

MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite …

P Hüther, J Hagmann, A Nunn, I Kakoulidou… - Quantitative Plant …, 2022 - cambridge.org
Whole-genome bisulfite sequencing (WGBS) is the standard method for profiling DNA
methylation at single-nucleotide resolution. Different tools have been developed to extract …

Meiotic recombination and genome evolution in plants

C Melamed-Bessudo, S Shilo, AA Levy - Current Opinion in Plant Biology, 2016 - Elsevier
Highlights•Providing new insight on meiotic recombination from whole genome and
epigenome analysis.•Crossovers are associated with DNA motifs together with an open …