HIV-1 drug resistance assay using Ion Torrent Next Generation Sequencing and on-instrument end-to-end analysis software
MT Pyne, KE Simmon, MA Mallory… - Journal of Clinical …, 2022 - Am Soc Microbiol
ABSTRACT HIV-1 antiretroviral therapy management requires sequencing the protease,
reverse transcriptase, and integrase portions of the HIV-1 pol gene. Most resistance testing …
reverse transcriptase, and integrase portions of the HIV-1 pol gene. Most resistance testing …
Cross-clade simultaneous HIV drug resistance genotyping for reverse transcriptase, protease, and integrase inhibitor mutations by Illumina MiSeq
Background Viral resistance to antiretroviral therapy threatens our best methods to control
and prevent HIV infection. Current drug resistance genotyping methods are costly, optimized …
and prevent HIV infection. Current drug resistance genotyping methods are costly, optimized …
External quality assessment for next-generation sequencing-based HIV drug resistance testing: Unique requirements and challenges
Over the past decade, there has been an increase in the adoption of next generation
sequencing (NGS) technologies for HIV drug resistance (HIVDR) testing. NGS far outweighs …
sequencing (NGS) technologies for HIV drug resistance (HIVDR) testing. NGS far outweighs …
[PDF][PDF] State of the Antiretroviral Therapy in Human Immunodeficiency Virus Drug Resistance: Science and Technology Knowledge Gap.
CA Boucher, MR Bobkova, AM Geretti, CC Hung… - AIDS …, 2018 - researchgate.net
Resistance to antiretroviral therapy (ART) threatens the efficacy of human immunodeficiency
virus type 1 (HIV-1) treatment. We present a review of knowledge gaps in the science and …
virus type 1 (HIV-1) treatment. We present a review of knowledge gaps in the science and …
Characterization of HIV-1 near full-length proviral genome quasispecies from patients with undetectable viral load undergoing first-line HAART therapy
BM Alves, JD Siqueira, MM Garrido, OM Botelho… - Viruses, 2017 - mdpi.com
Increased access to highly active antiretroviral therapy (HAART) by human
immunodeficiency virus postive (HIV+) individuals has become a reality worldwide. In Brazil …
immunodeficiency virus postive (HIV+) individuals has become a reality worldwide. In Brazil …
Highly accurate structure-based prediction of HIV-1 coreceptor usage suggests intermolecular interactions driving tropism
HIV-1 entry into host cells is mediated by interactions between the V3-loop of viral
glycoprotein gp120 and chemokine receptor CCR5 or CXCR4, collectively known as HIV-1 …
glycoprotein gp120 and chemokine receptor CCR5 or CXCR4, collectively known as HIV-1 …
Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus
SG Aralaguppe, AB Siddik, A Manickam… - Journal of virological …, 2016 - Elsevier
Analysing the HIV-1 near full-length genome (HIV-NFLG) facilitates new understanding into
the diversity of virus population dynamics at individual or population level. In this study we …
the diversity of virus population dynamics at individual or population level. In this study we …
Protease and gag diversity and drug resistance mutations among treatment-naive Mexican people living with HIV
S Climaco-Arvizu, V Flores-López… - BMC Infectious …, 2022 - Springer
Abstract Introduction In Mexico, HIV genotyping is performed in people living with HIV
(PLWH) failing their first-line antiretroviral (ARV) regimen; it is not routinely done for all …
(PLWH) failing their first-line antiretroviral (ARV) regimen; it is not routinely done for all …
[HTML][HTML] Next-generation sequencing and influenza virus: a short review of the published implementation attempts
R Ali, RM Blackburn, Z Kozlakidis - HAYATI Journal of Biosciences, 2016 - Elsevier
Influenza virus represents a major public health concern worldwide after recent pandemics.
To aid the understanding and characterization of the virus in ever-increasing sample …
To aid the understanding and characterization of the virus in ever-increasing sample …
Identification of minority resistance mutations in the HIV-1 integrase coding region using next generation sequencing
J Fonager, JT Larsson, C Hussing, FN Engsig… - Journal of Clinical …, 2015 - Elsevier
Background The current widely applied standard method to screen for HIV-1 genotypic
resistance is based on Sanger population sequencing (Sseq), which does not allow for the …
resistance is based on Sanger population sequencing (Sseq), which does not allow for the …