Chemical-genomic dissection of the CTD code

JR Tietjen, DW Zhang, JB Rodríguez-Molina… - Nature structural & …, 2010 - nature.com
Sequential modifications of the RNA polymerase II (Pol II) C-terminal domain (CTD)
coordinate the stage-specific association and release of cellular machines during …

A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome

BJ Venters, BF Pugh - Genome research, 2009 - genome.cshlp.org
The predominant organizational theme by which the transcription machinery and chromatin
regulators are positioned within promoter regions or throughout genes in a genome is …

The writers, readers, and functions of the RNA polymerase II C-terminal domain code

C Jeronimo, AR Bataille, F Robert - Chemical reviews, 2013 - ACS Publications
Transcription in the nucleus of animal cells is performed by three distinct RNA polymerases
(RNAP), namely RNAPI, RNAPII, and RNAPIII. Among them, RNAPII is responsible for the …

[HTML][HTML] Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells

Z Gvozdenov, Z Barcutean, K Struhl - Molecular cell, 2023 - cell.com
We measure transcriptional noise in yeast by analyzing chromatin structure and transcription
of an 18-kb region of DNA whose sequence was randomly generated. Nucleosomes fully …

The nuclear RNA exosome and its cofactors

M Schmid, TH Jensen - The biology of mRNA: structure and function, 2019 - Springer
The RNA exosome is a highly conserved ribonuclease endowed with 3′–5′ exonuclease
and endonuclease activities. The multisubunit complex resides in both the nucleus and the …

A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast

O Porrua, D Libri - Nature structural & molecular biology, 2013 - nature.com
Transcription termination is essential to generate functional RNAs and to prevent disruptive
polymerase collisions resulting from concurrent transcription. The yeast Sen1p helicase is …

RNA polymerase II transcription elongation control

J Guo, DH Price - Chemical reviews, 2013 - ACS Publications
Regulation of gene expression is critical in determining cell identity, development, and
responses to the cellular environment. DNA is the inherited source of genetic information …

Origins and activities of the eukaryotic exosome

S Lykke-Andersen, DE Brodersen… - Journal of cell …, 2009 - journals.biologists.com
The exosome is a multi-subunit 3′-5′ exonucleolytic complex that is conserved in
structure and function in all eukaryotes studied to date. The complex is present in both the …

Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1

K Kubicek, H Cerna, P Holub, J Pasulka… - Genes & …, 2012 - genesdev.cshlp.org
Recruitment of appropriate RNA processing factors to the site of transcription is controlled by
post-translational modifications of the C-terminal domain (CTD) of RNA polymerase II …

Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity

K Schmidt, JS Butler - Wiley Interdisciplinary Reviews: RNA, 2013 - Wiley Online Library
The advent of high‐throughput sequencing technologies has revealed that pervasive
transcription generates RNAs from nearly all regions of eukaryotic genomes. Normally …