Chemical-genomic dissection of the CTD code
JR Tietjen, DW Zhang, JB Rodríguez-Molina… - Nature structural & …, 2010 - nature.com
Sequential modifications of the RNA polymerase II (Pol II) C-terminal domain (CTD)
coordinate the stage-specific association and release of cellular machines during …
coordinate the stage-specific association and release of cellular machines during …
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
BJ Venters, BF Pugh - Genome research, 2009 - genome.cshlp.org
The predominant organizational theme by which the transcription machinery and chromatin
regulators are positioned within promoter regions or throughout genes in a genome is …
regulators are positioned within promoter regions or throughout genes in a genome is …
The writers, readers, and functions of the RNA polymerase II C-terminal domain code
Transcription in the nucleus of animal cells is performed by three distinct RNA polymerases
(RNAP), namely RNAPI, RNAPII, and RNAPIII. Among them, RNAPII is responsible for the …
(RNAP), namely RNAPI, RNAPII, and RNAPIII. Among them, RNAPII is responsible for the …
[HTML][HTML] Functional analysis of a random-sequence chromosome reveals a high level and the molecular nature of transcriptional noise in yeast cells
Z Gvozdenov, Z Barcutean, K Struhl - Molecular cell, 2023 - cell.com
We measure transcriptional noise in yeast by analyzing chromatin structure and transcription
of an 18-kb region of DNA whose sequence was randomly generated. Nucleosomes fully …
of an 18-kb region of DNA whose sequence was randomly generated. Nucleosomes fully …
The nuclear RNA exosome and its cofactors
M Schmid, TH Jensen - The biology of mRNA: structure and function, 2019 - Springer
The RNA exosome is a highly conserved ribonuclease endowed with 3′–5′ exonuclease
and endonuclease activities. The multisubunit complex resides in both the nucleus and the …
and endonuclease activities. The multisubunit complex resides in both the nucleus and the …
A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast
O Porrua, D Libri - Nature structural & molecular biology, 2013 - nature.com
Transcription termination is essential to generate functional RNAs and to prevent disruptive
polymerase collisions resulting from concurrent transcription. The yeast Sen1p helicase is …
polymerase collisions resulting from concurrent transcription. The yeast Sen1p helicase is …
RNA polymerase II transcription elongation control
Regulation of gene expression is critical in determining cell identity, development, and
responses to the cellular environment. DNA is the inherited source of genetic information …
responses to the cellular environment. DNA is the inherited source of genetic information …
Origins and activities of the eukaryotic exosome
S Lykke-Andersen, DE Brodersen… - Journal of cell …, 2009 - journals.biologists.com
The exosome is a multi-subunit 3′-5′ exonucleolytic complex that is conserved in
structure and function in all eukaryotes studied to date. The complex is present in both the …
structure and function in all eukaryotes studied to date. The complex is present in both the …
Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1
K Kubicek, H Cerna, P Holub, J Pasulka… - Genes & …, 2012 - genesdev.cshlp.org
Recruitment of appropriate RNA processing factors to the site of transcription is controlled by
post-translational modifications of the C-terminal domain (CTD) of RNA polymerase II …
post-translational modifications of the C-terminal domain (CTD) of RNA polymerase II …
Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity
The advent of high‐throughput sequencing technologies has revealed that pervasive
transcription generates RNAs from nearly all regions of eukaryotic genomes. Normally …
transcription generates RNAs from nearly all regions of eukaryotic genomes. Normally …