Forest tree genomics: 10 achievements from the past 10 years and future prospects

C Plomion, C Bastien, MB Bogeat-Triboulot… - Annals of Forest …, 2016 - Springer
Key message This review highlights some of the discoveries and applications made
possible by “omics” technologies over the last 10 years and provides perspectives for …

Conifer genomics and adaptation: at the crossroads of genetic diversity and genome function

J Prunier, JP Verta, JJ MacKay - New Phytologist, 2016 - Wiley Online Library
Conifers have been understudied at the genomic level despite their worldwide ecological
and economic importance but the situation is rapidly changing with the development of next …

The large repertoire of conifer NLR resistance genes includes drought responsive and highly diversified RNLs

C Van Ghelder, GJ Parent, P Rigault, J Prunier… - Scientific Reports, 2019 - nature.com
Abstract The NLRs or NBS-LRRs (nucleotide-binding, leucine-rich-repeat) form the largest
resistance gene family in plants, with lineage-specific contingents of TNL, CNL and RNL …

Transcriptome profiling of the cold response and signaling pathways in Lilium lancifolium

J Wang, Y Yang, X Liu, J Huang, Q Wang, J Gu, Y Lu - BMC genomics, 2014 - Springer
Background Lilium lancifolium, a very important cold-resistant wild flower for lily cold
resistance breeding, is widely distributed in southwestern and northeastern China. To gain a …

Genome-Wide Analysis Reveals Diverged Patterns of Codon Bias, Gene Expression, and Rates of Sequence Evolution in Picea Gene Families

AR De La Torre, YC Lin, Y Van de Peer… - Genome biology and …, 2015 - academic.oup.com
The recent sequencing of several gymnosperm genomes has greatly facilitated studying the
evolution of their genes and gene families. In this study, we examine the evidence for …

Molecular aspects of conifer zygotic and somatic embryo development: a review of genome-wide approaches and recent insights

JF Trontin, K Klimaszewska, A Morel… - In vitro embryogenesis …, 2016 - Springer
Genome-wide profiling (transcriptomics, proteomics, metabolomics) is providing
unprecedented opportunities to unravel the complexity of coordinated gene expression …

The regulation of cambial activity in Chinese fir (Cunninghamia lanceolata) involves extensive transcriptome remodeling

Z Qiu, L Wan, T Chen, Y Wan, X He, S Lu… - New …, 2013 - Wiley Online Library
C hinese fir (C unninghamia lanceolata), a commercially important tree for the timber and
pulp industry, is widely distributed in southern C hina and northern V ietnam, but its large …

Integrative transcriptomic and proteomic analysis reveals mechanisms of silica-induced pulmonary fibrosis in rats

C Bo, J Zhang, L Sai, Z Du, G Yu, C Li, M Li… - BMC Pulmonary …, 2022 - Springer
Background Silicosis is a systemic disease characterized by persistent inflammation and
incurable pulmonary fibrosis. Although great effort has been made to understand the …

NorWood: a gene expression resource for evo‐devo studies of conifer wood development

S Jokipii‐Lukkari, D Sundell, O Nilsson… - New …, 2017 - Wiley Online Library
The secondary xylem of conifers is composed mainly of tracheids that differ anatomically
and chemically from angiosperm xylem cells. There is currently no high‐spatial‐resolution …

Expansion of the dehydrin gene family in the Pinaceae is associated with considerable structural diversity and drought-responsive expression

J Stival Sena, I Giguère, P Rigault, J Bousquet… - Tree …, 2018 - academic.oup.com
Temperatures are expected to increase over the next century in all terrestrial biomes and
particularly in boreal forests, where drought-induced mortality has been predicted to rise …