Prevalence of SARS-CoV-2 variants in Prague wastewater determined by nanopore-based sequencing

A Dostálková, K Zdeňková, J Bartáčková, E Čermáková… - Chemosphere, 2024 - Elsevier
The early detection of upcoming disease outbreaks is essential to avoid both health and
economic damage. The last four years of COVID-19 pandemic have proven wastewater …

Targeted amplification-based whole genome sequencing of Monkeypox virus in clinical specimens

S Isabel, A Eshaghi, VR Duvvuri, JB Gubbay… - Microbiology …, 2024 - Am Soc Microbiol
The 2022 mpox outbreak has led to more than 91,000 cases in 115 countries. Whole
genome sequencing (WGS) has been at the forefront of surveillance and outbreak …

[HTML][HTML] Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort …

J Haars, N Palanisamy, F Wallin, P Mölling, J Lindh… - Microorganisms, 2023 - mdpi.com
Monoclonal antibodies (mAbs) are an important treatment option for COVID-19 caused by
SARS-CoV-2, especially in immunosuppressed patients. However, this treatment option can …

Nosocomial transmission of fluconazole-resistant Candida glabrata bloodstream isolates revealed by whole-genome sequencing

IJ Hwang, YJ Kwon, HJ Lim, KH Hong, H Lee… - Microbiology …, 2024 - journals.asm.org
The clonal transmission of fluconazole-resistant Candida glabrata isolates within hospitals
has seldom been analyzed by whole-genome sequencing (WGS). We performed WGS on …

Whole genome analysis reveals unique traits of SARS-CoV-2 in pediatric patients

S Chandy, H Kumar, S Pearl, S Basu, M Gurumoorthy… - Gene, 2024 - Elsevier
Abstract Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) continues to
challenge the global healthcare with emerging variants and higher infectivity as well as …

[HTML][HTML] Longitudinal Sequencing and Variant Detection of SARS-CoV-2 across Southern California Wastewater

JA Rothman, A Saghir, AG Zimmer-Faust… - Applied …, 2024 - mdpi.com
Wastewater-based epidemiology (WBE) is useful for detecting pathogen prevalence and
may serve to effectively monitor diseases across broad scales. WBE has been used …

Rapid identification of SARS-CoV-2 strains via isothermal enzymatic recombinase amplification and nanopore sequencing

DH Tran, HDK Do, HT Tran, TNM Pham, HD Nguyen… - Archives of …, 2024 - Springer
Surveillance of the SARS-CoV-2 genome has become a crucial technique in the
management of COVID-19, aiding the pandemic response and supporting effective public …

Biosecurity strategies to mitigate risk of viruses in vegetable crops–Cucumber green mottle mosaic virus as a model

J Mackie - 2024 - opal.latrobe.edu.au
Biosecurity Strategies to Mitigate Risk of Viruses in Vegetable Crops – Cucumber Green
Mottle Mosaic Virus as a Model Page 1 Biosecurity Strategies to Mitigate Risk of Viruses in …

SARS-CoV-2 Omicron Variants and Their Susceptibility Towards Monoclonal Antibodies in a Swedish Cohort During 2022-23, Studied by Next-Generation …

J Haars, N Palanisamy, F Wallin, P Mölling, J Lindh… - 2023 - preprints.org
Monoclonal antibodies (mAbs) are an important treatment option for COVID-19 caused by
SARS-CoV-2, especially in immunosuppressed patients. However, this treatment option can …

Optimization and Validation of Sars-CoV-2 Sequencing

J Ferdous - 2024 - search.proquest.com
Abstract The emergence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-
2) in December 2019 triggered a global pandemic, causing the urgent need for effective …