Protein-based biological materials: molecular design and artificial production

A Miserez, J Yu, P Mohammadi - Chemical Reviews, 2023 - ACS Publications
Polymeric materials produced from fossil fuels have been intimately linked to the
development of industrial activities in the 20th century and, consequently, to the …

Single-cell RNA sequencing to explore immune cell heterogeneity

E Papalexi, R Satija - Nature Reviews Immunology, 2018 - nature.com
Advances in single-cell RNA sequencing (scRNA-seq) have allowed for comprehensive
analysis of the immune system. In this Review, we briefly describe the available scRNA-seq …

Comprehensive functional genomic resource and integrative model for the human brain

D Wang, S Liu, J Warrell, H Won, X Shi, FCP Navarro… - Science, 2018 - science.org
INTRODUCTION Strong genetic associations have been found for a number of psychiatric
disorders. However, understanding the underlying molecular mechanisms remains …

Single-cell RNA-seq reveals the transcriptional landscape and heterogeneity of aortic macrophages in murine atherosclerosis

C Cochain, E Vafadarnejad, P Arampatzi… - Circulation …, 2018 - Am Heart Assoc
Rationale: It is assumed that atherosclerotic arteries contain several macrophage subsets
endowed with specific functions. The precise identity of these subsets is poorly …

Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data

J Racle, K de Jonge, P Baumgaertner, DE Speiser… - elife, 2017 - elifesciences.org
Immune cells infiltrating tumors can have important impact on tumor progression and
response to therapy. We present an efficient algorithm to simultaneously estimate the …

[HTML][HTML] Statistics or biology: the zero-inflation controversy about scRNA-seq data

R Jiang, T Sun, D Song, JJ Li - Genome biology, 2022 - Springer
Researchers view vast zeros in single-cell RNA-seq data differently: some regard zeros as
biological signals representing no or low gene expression, while others regard zeros as …

[HTML][HTML] An accurate and robust imputation method scImpute for single-cell RNA-seq data

WV Li, JJ Li - Nature communications, 2018 - nature.com
The emerging single-cell RNA sequencing (scRNA-seq) technologies enable the
investigation of transcriptomic landscapes at the single-cell resolution. ScRNA-seq data …

[HTML][HTML] A practical solution to pseudoreplication bias in single-cell studies

KD Zimmerman, MA Espeland, CD Langefeld - Nature communications, 2021 - nature.com
Cells from the same individual share common genetic and environmental backgrounds and
are not statistically independent; therefore, they are subsamples or pseudoreplicates. Thus …

[HTML][HTML] Comparative analysis of single-cell RNA sequencing methods

C Ziegenhain, B Vieth, S Parekh, B Reinius… - Molecular cell, 2017 - cell.com
Single-cell RNA sequencing (scRNA-seq) offers new possibilities to address biological and
medical questions. However, systematic comparisons of the performance of diverse scRNA …

[HTML][HTML] High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing

ZX Shi, ZC Chen, JY Zhong, KH Hu, YF Zheng… - Nature …, 2023 - nature.com
Although long-read single-cell RNA isoform sequencing (scISO-Seq) can reveal alternative
RNA splicing in individual cells, it suffers from a low read throughput. Here, we introduce HIT …