Protein-based biological materials: molecular design and artificial production
Polymeric materials produced from fossil fuels have been intimately linked to the
development of industrial activities in the 20th century and, consequently, to the …
development of industrial activities in the 20th century and, consequently, to the …
Single-cell RNA sequencing to explore immune cell heterogeneity
E Papalexi, R Satija - Nature Reviews Immunology, 2018 - nature.com
Advances in single-cell RNA sequencing (scRNA-seq) have allowed for comprehensive
analysis of the immune system. In this Review, we briefly describe the available scRNA-seq …
analysis of the immune system. In this Review, we briefly describe the available scRNA-seq …
Comprehensive functional genomic resource and integrative model for the human brain
INTRODUCTION Strong genetic associations have been found for a number of psychiatric
disorders. However, understanding the underlying molecular mechanisms remains …
disorders. However, understanding the underlying molecular mechanisms remains …
Single-cell RNA-seq reveals the transcriptional landscape and heterogeneity of aortic macrophages in murine atherosclerosis
C Cochain, E Vafadarnejad, P Arampatzi… - Circulation …, 2018 - Am Heart Assoc
Rationale: It is assumed that atherosclerotic arteries contain several macrophage subsets
endowed with specific functions. The precise identity of these subsets is poorly …
endowed with specific functions. The precise identity of these subsets is poorly …
Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data
Immune cells infiltrating tumors can have important impact on tumor progression and
response to therapy. We present an efficient algorithm to simultaneously estimate the …
response to therapy. We present an efficient algorithm to simultaneously estimate the …
[HTML][HTML] Statistics or biology: the zero-inflation controversy about scRNA-seq data
Researchers view vast zeros in single-cell RNA-seq data differently: some regard zeros as
biological signals representing no or low gene expression, while others regard zeros as …
biological signals representing no or low gene expression, while others regard zeros as …
[HTML][HTML] An accurate and robust imputation method scImpute for single-cell RNA-seq data
The emerging single-cell RNA sequencing (scRNA-seq) technologies enable the
investigation of transcriptomic landscapes at the single-cell resolution. ScRNA-seq data …
investigation of transcriptomic landscapes at the single-cell resolution. ScRNA-seq data …
[HTML][HTML] A practical solution to pseudoreplication bias in single-cell studies
KD Zimmerman, MA Espeland, CD Langefeld - Nature communications, 2021 - nature.com
Cells from the same individual share common genetic and environmental backgrounds and
are not statistically independent; therefore, they are subsamples or pseudoreplicates. Thus …
are not statistically independent; therefore, they are subsamples or pseudoreplicates. Thus …
[HTML][HTML] Comparative analysis of single-cell RNA sequencing methods
Single-cell RNA sequencing (scRNA-seq) offers new possibilities to address biological and
medical questions. However, systematic comparisons of the performance of diverse scRNA …
medical questions. However, systematic comparisons of the performance of diverse scRNA …
[HTML][HTML] High-throughput and high-accuracy single-cell RNA isoform analysis using PacBio circular consensus sequencing
ZX Shi, ZC Chen, JY Zhong, KH Hu, YF Zheng… - Nature …, 2023 - nature.com
Although long-read single-cell RNA isoform sequencing (scISO-Seq) can reveal alternative
RNA splicing in individual cells, it suffers from a low read throughput. Here, we introduce HIT …
RNA splicing in individual cells, it suffers from a low read throughput. Here, we introduce HIT …