Mapping the breast tumor microenvironment: proximity analysis reveals spatial relationships between macrophage subtypes and metastasis-initiating cancer cells
EM Grasset, A Desphande, JW Lee, Y Cho, SM Shin… - bioRxiv, 2024 - biorxiv.org
The development of metastasis, responsible for the majority of cancer-related fatalities, is the
most dangerous aspect of breast cancer, the predominant malignancy affecting women. We …
most dangerous aspect of breast cancer, the predominant malignancy affecting women. We …
[HTML][HTML] Exploring Biocomplexity in Cancer: A Comprehensive Review
A Szasz, GP Szigeti - Open Journal of Biophysics, 2024 - scirp.org
Living objects have complex internal and external interactions. The complexity is regulated
and controlled by homeostasis, which is the balance of multiple opposing influences. The …
and controlled by homeostasis, which is the balance of multiple opposing influences. The …
Temporal tissue dynamics from a single snapshot
Physiological and pathological processes such as inflammation or cancer emerge from the
interactions between cells over time. However, methods to follow cell populations over time …
interactions between cells over time. However, methods to follow cell populations over time …
Explainable Machine Learning Reveals the Role of the Breast Tumor Microenvironment in Neoadjuvant Chemotherapy Outcome
Recent advancements in single-cell RNA sequencing (scRNA-seq) have enabled the
identification of phenotypic diversity within breast tumor tissues. However, the contribution of …
identification of phenotypic diversity within breast tumor tissues. However, the contribution of …
Multiplex imaging of localized prostate tumors reveals changes in mast cell type composition and spatial organization of AR-positive cells in the tumor …
Mapping spatial interactions of cancer, immune and stromal cells present novel
opportunities for patient stratification and for advancing immunotherapy. While single-cell …
opportunities for patient stratification and for advancing immunotherapy. While single-cell …
Spatial and Compositional Biomarkers in Tumor Microenvironment Predicts Clinical Outcomes in Triple-Negative Breast Cancer
Triple-negative breast cancer (TNBC) is an aggressive subtype of breast cancer with limited
treatment options, which warrants identification of novel therapeutic targets. Deciphering …
treatment options, which warrants identification of novel therapeutic targets. Deciphering …
Multiplex Single-Cell Bioprinting for Engineering of Heterogeneous Tissue Constructs with Subcellular Spatial Resolution
Tissue development, function, and disease are largely driven by the spatial organization of
individual cells and their cell-cell interactions. Precision engineered tissues with single-cell …
individual cells and their cell-cell interactions. Precision engineered tissues with single-cell …
[HTML][HTML] Robust biomarker discovery through multiplatform multiplex image analysis of breast cancer clinical cohorts
J Eng, E Bucher, Z Hu, M Sanders, B Chakravarthy… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Spatial profiling of tissues promises to elucidate tumor-microenvironment interactions and
enable development of spatial biomarkers to predict patient response to immunotherapy and …
enable development of spatial biomarkers to predict patient response to immunotherapy and …
G-quadruplex DNA structures mediate non-autonomous instruction of breast tumour microenvironments
P Hunold, MN Hoehne, M Kiljan, O van Ray, J Herter… - bioRxiv, 2023 - biorxiv.org
Breast cancer is characterised by genetic and epigenetic alterations, such as G-quadruplex
(G4) DNA secondary structures. Here, we uncover differentially enriched G4 structure …
(G4) DNA secondary structures. Here, we uncover differentially enriched G4 structure …
Bi-level Graphs for Cellular Pattern Discovery
The tumor microenvironment is widely recognized for its central role in driving cancer
progression and influencing prognostic outcomes. Despite extensive research efforts …
progression and influencing prognostic outcomes. Despite extensive research efforts …