[PDF][PDF] Tyrosine-1 of RNA polymerase II CTD controls global termination of gene transcription in mammals

N Shah, MA Maqbool, Y Yahia, AZ El Aabidine… - Molecular cell, 2018 - cell.com
The carboxy-terminal domain (CTD) of RNA polymerase (Pol) II is composed of a repetition
of YSPTSPS heptads and functions as a loading platform for protein complexes that regulate …

Negative supercoil at gene boundaries modulates gene topology

YJ Achar, M Adhil, R Choudhary, N Gilbert, M Foiani - Nature, 2020 - nature.com
Transcription challenges the integrity of replicating chromosomes by generating topological
stress and conflicts with forks,. The DNA topoisomerases Top1 and Top2 and the HMGB …

An integrated model for termination of RNA polymerase III transcription

J Xie, U Aiello, Y Clement, N Haidara, M Girbig… - Science …, 2022 - science.org
RNA polymerase III (RNAPIII) synthesizes essential and abundant noncoding RNAs such as
transfer RNAs. Controlling RNAPIII span of activity by accurate and efficient termination is a …

[HTML][HTML] Landscape of transcription termination in Arabidopsis revealed by single-molecule nascent RNA sequencing

W Mo, B Liu, H Zhang, X Jin, D Lu, Y Yu, Y Liu, J Jia… - Genome biology, 2021 - Springer
Background The dynamic process of transcription termination produces transient RNA
intermediates that are difficult to distinguish from each other via short-read sequencing …

[HTML][HTML] Distinct transcriptional roles for Histone H3-K56 acetylation during the cell cycle in Yeast

S Topal, P Vasseur, M Radman-Livaja… - Nature …, 2019 - nature.com
Dynamic disruption and reassembly of promoter-proximal nucleosomes is a conserved
hallmark of transcriptionally active chromatin. Histone H3-K56 acetylation (H3K56Ac) …

[PDF][PDF] Cell-size-dependent transcription of FLC and its antisense long non-coding RNA COOLAIR explain cell-to-cell expression variation

R Ietswaart, S Rosa, Z Wu, C Dean, M Howard - Cell Systems, 2017 - cell.com
Single-cell quantification of transcription kinetics and variability promotes a mechanistic
understanding of gene regulation. Here, using single-molecule RNA fluorescence in situ …

Quantitative regulation of FLC via coordinated transcriptional initiation and elongation

Z Wu, R Ietswaart, F Liu, H Yang… - Proceedings of the …, 2016 - National Acad Sciences
The basis of quantitative regulation of gene expression is still poorly understood. In
Arabidopsis thaliana, quantitative variation in expression of FLOWERING LOCUS C (FLC) …

Pcf11 orchestrates transcription termination pathways in yeast

P Grzechnik, MR Gdula, NJ Proudfoot - Genes & development, 2015 - genesdev.cshlp.org
In Saccharomyces cerevisiae, short noncoding RNA (ncRNA) generated by RNA
polymerase II (Pol II) are terminated by the NRD complex consisting of Nrd1, Nab3, and …

High‐resolution transcription maps reveal the widespread impact of roadblock termination in yeast

T Candelli, D Challal, JB Briand, J Boulay… - The EMBO …, 2018 - embopress.org
Transcription termination delimits transcription units but also plays important roles in limiting
pervasive transcription. We have previously shown that transcription termination occurs …

[PDF][PDF] Engineered covalent inactivation of TFIIH-kinase reveals an elongation checkpoint and results in widespread mRNA stabilization

JB Rodríguez-Molina, SC Tseng, SP Simonett… - Molecular cell, 2016 - cell.com
During transcription initiation, the TFIIH-kinase Kin28/Cdk7 marks RNA polymerase II (Pol II)
by phosphorylating the C-terminal domain (CTD) of its largest subunit. Here we describe a …