Genome size diversity and its impact on the evolution of land plants

J Pellicer, O Hidalgo, S Dodsworth, IJ Leitch - Genes, 2018 - mdpi.com
Genome size is a biodiversity trait that shows staggering diversity across eukaryotes, varying
over 64,000-fold. Of all major taxonomic groups, land plants stand out due to their …

[HTML][HTML] Genomics of evolutionary novelty in hybrids and polyploids

G Nieto Feliner, J Casacuberta, JF Wendel - Frontiers in genetics, 2020 - frontiersin.org
It has long been recognized that hybridization and polyploidy are prominent processes in
plant evolution. Although classically recognized as significant in speciation and adaptation …

[HTML][HTML] Allele-aware chromosome-level genome assembly and efficient transgene-free genome editing for the autotetraploid cultivated alfalfa

H Chen, Y Zeng, Y Yang, L Huang, B Tang… - Nature …, 2020 - nature.com
Artificially improving traits of cultivated alfalfa (Medicago sativa L.), one of the most important
forage crops, is challenging due to the lack of a reference genome and an efficient genome …

[HTML][HTML] Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

X Qiao, Q Li, H Yin, K Qi, L Li… - Genome …, 2019 - genomebiology.biomedcentral.com
The sharp increase of plant genome and transcriptome data provide valuable resources to
investigate evolutionary consequences of gene duplication in a range of taxa, and unravel …

[HTML][HTML] Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms

S Wu, B Han, Y Jiao - Molecular Plant, 2020 - Elsevier
Ancient whole-genome duplications (WGDs or polyploidy) are prevalent in plants, and some
WGDs occurred during the timing of severe global environmental changes. It has been …

The pangenome of hexaploid bread wheat

JD Montenegro, AA Golicz, PE Bayer… - The Plant …, 2017 - Wiley Online Library
There is an increasing understanding that variation in gene presence–absence plays an
important role in the heritability of agronomic traits; however, there have been relatively few …

[HTML][HTML] Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax

ZH Wang, XF Wang, T Lu, MR Li, P Jiang… - Nature …, 2022 - nature.com
All extant core-eudicot plants share a common ancestral genome that has experienced
cyclic polyploidizations and (re) diploidizations. Reshuffling of the ancestral core-eudicot …

[HTML][HTML] A collinearity-incorporating homology inference strategy for connecting emerging assemblies in the triticeae tribe as a pilot practice in the plant pangenomic …

Y Chen, W Song, X Xie, Z Wang, P Guan, H Peng… - Molecular Plant, 2020 - Elsevier
Plant genome sequencing has dramatically increased, and some species even have
multiple high-quality reference versions. Demands for clade-specific homology inference …

Impact of transposable elements on polyploid plant genomes

CM Vicient, JM Casacuberta - Annals of Botany, 2017 - academic.oup.com
Background The growing wealth of knowledge on whole-plant genome sequences is
highlighting the key role of transposable elements (TEs) in plant evolution, as a driver of …

The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation

JF Wendel, D Lisch, G Hu, AS Mason - Current opinion in genetics & …, 2018 - Elsevier
We consider the rapidly advancing discipline of plant evolutionary genomics, with a focus on
the evolution of polyploid genomes. In many lineages, polyploidy is followed by 'biased …