[PDF][PDF] SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19

A Grifoni, J Sidney, R Vita, B Peters, S Crotty… - Cell host & …, 2021 - cell.com
Over the past year, numerous studies in the peer reviewed and preprint literature have
reported on the virological, epidemiological and clinical characteristics of the coronavirus …

The evolving landscape of biomarkers for checkpoint inhibitor immunotherapy

JJ Havel, D Chowell, TA Chan - Nature Reviews Cancer, 2019 - nature.com
Checkpoint inhibitor-based immunotherapies that target cytotoxic T lymphocyte antigen 4
(CTLA4) or the programmed cell death 1 (PD1) pathway have achieved impressive success …

[PDF][PDF] CD8+ T cells specific for an immunodominant SARS-CoV-2 nucleocapsid epitope cross-react with selective seasonal coronaviruses

KE Lineburg, EJ Grant, S Swaminathan… - Immunity, 2021 - cell.com
Efforts are being made worldwide to understand the immune response to severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus responsible for the coronavirus …

Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy

D Chowell, LGT Morris, CM Grigg, JK Weber… - Science, 2018 - science.org
CD8+ T cell–dependent killing of cancer cells requires efficient presentation of tumor
antigens by human leukocyte antigen class I (HLA-I) molecules. However, the extent to …

Fundamentals and methods for T‐and B‐cell epitope prediction

JL Sanchez-Trincado… - Journal of …, 2017 - Wiley Online Library
Adaptive immunity is mediated by T‐and B‐cells, which are immune cells capable of
developing pathogen‐specific memory that confers immunological protection. Memory and …

Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells

D Weiskopf, MA Angelo… - Proceedings of the …, 2013 - National Acad Sciences
The role of CD8+ T cells in dengue virus infection and subsequent disease manifestations is
not fully understood. According to the original antigenic sin theory, skewing of T-cell …

[HTML][HTML] TCR recognition of peptide–MHC-I: Rule makers and breakers

C Szeto, CA Lobos, AT Nguyen, S Gras - International journal of …, 2020 - mdpi.com
T cells are a critical part of the adaptive immune system that are able to distinguish between
healthy and unhealthy cells. Upon recognition of protein fragments (peptides), activated T …

Dengue virus infection elicits highly polarized CX3CR1+ cytotoxic CD4+ T cells associated with protective immunity

D Weiskopf, DJ Bangs, J Sidney… - Proceedings of the …, 2015 - National Acad Sciences
Dengue virus (DENV) is a rapidly spreading pathogen with unusual pathogenesis, and
correlates of protection from severe dengue disease and vaccine efficacy have not yet been …

Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations

M Nielsen, C Lundegaard, P Worning… - Protein …, 2003 - Wiley Online Library
In this paper we describe an improved neural network method to predict T‐cell class I
epitopes. A novel input representation has been developed consisting of a combination of …

[PDF][PDF] Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses

A Nathan, EJ Rossin, C Kaseke, RJ Park, A Khatri… - Cell, 2021 - cell.com
The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants
that escape convalescent and vaccine-induced antibody responses has renewed focus on …