Gene retention, fractionation and subgenome differences in polyploid plants

F Cheng, J Wu, X Cai, J Liang, M Freeling, X Wang - Nature plants, 2018 - nature.com
All natural plant species are evolved from ancient polyploids. Polyloidization plays an
important role in plant genome evolution, species divergence and crop domestication. We …

Diversity, phylogeny, and adaptation of bryophytes: insights from genomic and transcriptomic data

QH Wang, J Zhang, Y Liu, Y Jia, YN Jiao… - Journal of …, 2022 - academic.oup.com
Bryophytes including mosses, liverworts, and hornworts are among the earliest land plants,
and occupy a crucial phylogenetic position to aid in the understanding of plant …

[HTML][HTML] Insights into land plant evolution garnered from the Marchantia polymorpha genome

JL Bowman, T Kohchi, KT Yamato, J Jenkins, S Shu… - Cell, 2017 - cell.com
The evolution of land flora transformed the terrestrial environment. Land plants evolved from
an ancestral charophycean alga from which they inherited developmental, biochemical, and …

PlantPAN3. 0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants

CN Chow, TY Lee, YC Hung, GZ Li… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Plant Promoter Analysis Navigator (PlantPAN; http://PlantPAN. itps. ncku. edu.
tw/) is an effective resource for predicting regulatory elements and reconstructing …

Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators

I De Clercq, J Van de Velde, X Luo, L Liu, V Storme… - Nature Plants, 2021 - nature.com
Gene regulation is a dynamic process in which transcription factors (TFs) play an important
role in controlling spatiotemporal gene expression. To enhance our global understanding of …

Identification of plant enhancers and their constituent elements by STARR-seq in tobacco leaves

T Jores, J Tonnies, MW Dorrity, JT Cuperus… - The Plant …, 2020 - academic.oup.com
Genetic engineering of cis-regulatory elements in crop plants is a promising strategy to
ensure food security. However, such engineering is currently hindered by our limited …

[HTML][HTML] The complex network of transcription factors, immune checkpoint inhibitors and stemness features in colorectal cancer: A recent update

M Merhi, F Ahmad, N Taib, V Inchakalody… - Seminars in Cancer …, 2023 - Elsevier
Cancer immunity is regulated by several mechanisms that include co-stimulatory and/or co-
inhibitory molecules known as immune checkpoints expressed by the immune cells. In …

Comprehensive co-expression analysis provides novel insights into temporal variation of flavonoids in fresh leaves of the tea plant (Camellia sinensis)

J Zhu, Q Xu, S Zhao, X Xia, X Yan, Y An, X Mi, L Guo… - Plant Science, 2020 - Elsevier
Flavonoids are the major class of characteristic secondary compounds in Camellia sinensis
that affect quality of tea. However, the temporal variation and the underlying regulatory …

[HTML][HTML] Biotechnological Interventions in Tomato (Solanum lycopersicum) for Drought Stress Tolerance: Achievements and Future Prospects

R Krishna, WA Ansari, PS Soumia, A Yadav… - BioTech, 2022 - mdpi.com
Tomato production is severely affected by abiotic stresses (drought, flood, heat, and salt)
and causes approximately 70% loss in yield depending on severity and duration of the …

Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development

L Lepiniec, M Devic, TJ Roscoe, D Bouyer, DX Zhou… - Plant reproduction, 2018 - Springer
Abstract The LAFL (ie LEC1, ABI3, FUS3, and LEC2) master transcriptional regulators
interact to form different complexes that induce embryo development and maturation, and …