Toward a fully resolved fungal tree of life
In this review, we discuss the current status and future challenges for fully elucidating the
fungal tree of life. In the last 15 years, advances in genomic technologies have …
fungal tree of life. In the last 15 years, advances in genomic technologies have …
Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
[HTML][HTML] A genome-scale phylogeny of the kingdom Fungi
Phylogenomic studies using genome-scale amounts of data have greatly improved
understanding of the tree of life. Despite the diversity, ecological significance, and …
understanding of the tree of life. Despite the diversity, ecological significance, and …
Rooting the animal tree of life
Identifying our most distant animal relatives has emerged as one of the most challenging
problems in phylogenetics. This debate has major implications for our understanding of the …
problems in phylogenetics. This debate has major implications for our understanding of the …
Phylogenomic subsampling and the search for phylogenetically reliable loci
N Mongiardino Koch - Molecular biology and evolution, 2021 - academic.oup.com
Phylogenomic subsampling is a procedure by which small sets of loci are selected from
large genome-scale data sets and used for phylogenetic inference. This step is often …
large genome-scale data sets and used for phylogenetic inference. This step is often …
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set
Premise To further advance the understanding of the species‐rich, economically and
ecologically important angiosperm order Myrtales in the rosid clade, comprising nine …
ecologically important angiosperm order Myrtales in the rosid clade, comprising nine …
Phylogenomic conflict analyses in the apple genus Malus sl reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex …
Phylogenomic evidence from an increasing number of studies has demonstrated that
different data sets and analytical approaches often reconstruct strongly supported but …
different data sets and analytical approaches often reconstruct strongly supported but …
Nuclear phylogenomic analyses of asterids conflict with plastome trees and support novel relationships among major lineages
Premise Discordance between nuclear and organellar phylogenies (cytonuclear
discordance) is a well‐documented phenomenon at shallow evolutionary levels but has …
discordance) is a well‐documented phenomenon at shallow evolutionary levels but has …
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in …
With the decreasing cost and availability of many newly developed bioinformatics pipelines,
next‐generation sequencing (NGS) has revolutionized plant systematics in recent years …
next‐generation sequencing (NGS) has revolutionized plant systematics in recent years …
A phylogenomic approach resolves the backbone of Prunus (Rosaceae) and identifies signals of hybridization and allopolyploidy
The genus Prunus, which contains 250–400 species, has ample genomic resources for the
economically important taxa in the group including cherries, peaches, and almonds …
economically important taxa in the group including cherries, peaches, and almonds …