The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
The correlation of phenotypic outcomes with genetic variation and environmental factors is a
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …
Phenolyzer: phenotype-based prioritization of candidate genes for human diseases
Prior biological knowledge and phenotype information may help to identify disease genes
from human whole-genome and whole-exome sequencing studies. We developed …
from human whole-genome and whole-exome sequencing studies. We developed …
Settling the score: variant prioritization and Mendelian disease
When investigating Mendelian disease using exome or genome sequencing, distinguishing
disease-causing genetic variants from the multitude of candidate variants is a complex …
disease-causing genetic variants from the multitude of candidate variants is a complex …
Prevalence of sexual dimorphism in mammalian phenotypic traits
The role of sex in biomedical studies has often been overlooked, despite evidence of
sexually dimorphic effects in some biological studies. Here, we used high-throughput …
sexually dimorphic effects in some biological studies. Here, we used high-throughput …
DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations
The identification of physical interactions between drug candidate compounds and target
biomolecules is an important process in drug discovery. Since conventional screening …
biomolecules is an important process in drug discovery. Since conventional screening …
Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium
TF Meehan, N Conte, DB West, JO Jacobsen… - Nature …, 2017 - nature.com
Although next-generation sequencing has revolutionized the ability to associate variants
with human diseases, diagnostic rates and development of new therapies are still limited by …
with human diseases, diagnostic rates and development of new therapies are still limited by …
Deep phenotyping for precision medicine
PN Robinson - Human mutation, 2012 - Wiley Online Library
In medical contexts, the word “phenotype” is used to refer to some deviation from normal
morphology, physiology, or behavior. The analysis of phenotype plays a key role in clinical …
morphology, physiology, or behavior. The analysis of phenotype plays a key role in clinical …
Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases
R Chen, L Shi, J Hakenberg, B Naughton, P Sklar… - Nature …, 2016 - nature.com
Genetic studies of human disease have traditionally focused on the detection of disease-
causing mutations in afflicted individuals. Here we describe a complementary approach that …
causing mutations in afflicted individuals. Here we describe a complementary approach that …
Reconciling evidence-based medicine and precision medicine in the era of big data: challenges and opportunities
JS Beckmann, D Lew - Genome medicine, 2016 - Springer
This era of groundbreaking scientific developments in high-resolution, high-throughput
technologies is allowing the cost-effective collection and analysis of huge, disparate …
technologies is allowing the cost-effective collection and analysis of huge, disparate …
Ensembl 2013
Abstract The Ensembl project (http://www. ensembl. org) provides genome information for
sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat …
sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat …