The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

CJ Mungall, JA McMurry, S Köhler… - Nucleic acids …, 2017 - academic.oup.com
The correlation of phenotypic outcomes with genetic variation and environmental factors is a
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …

Phenolyzer: phenotype-based prioritization of candidate genes for human diseases

H Yang, PN Robinson, K Wang - Nature methods, 2015 - nature.com
Prior biological knowledge and phenotype information may help to identify disease genes
from human whole-genome and whole-exome sequencing studies. We developed …

Settling the score: variant prioritization and Mendelian disease

K Eilbeck, A Quinlan, M Yandell - Nature Reviews Genetics, 2017 - nature.com
When investigating Mendelian disease using exome or genome sequencing, distinguishing
disease-causing genetic variants from the multitude of candidate variants is a complex …

Prevalence of sexual dimorphism in mammalian phenotypic traits

NA Karp, J Mason, AL Beaudet, Y Benjamini… - Nature …, 2017 - nature.com
The role of sex in biomedical studies has often been overlooked, despite evidence of
sexually dimorphic effects in some biological studies. Here, we used high-throughput …

DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations

AS Rifaioglu, E Nalbat, V Atalay, MJ Martin… - Chemical …, 2020 - pubs.rsc.org
The identification of physical interactions between drug candidate compounds and target
biomolecules is an important process in drug discovery. Since conventional screening …

Disease model discovery from 3,328 gene knockouts by The International Mouse Phenotyping Consortium

TF Meehan, N Conte, DB West, JO Jacobsen… - Nature …, 2017 - nature.com
Although next-generation sequencing has revolutionized the ability to associate variants
with human diseases, diagnostic rates and development of new therapies are still limited by …

Deep phenotyping for precision medicine

PN Robinson - Human mutation, 2012 - Wiley Online Library
In medical contexts, the word “phenotype” is used to refer to some deviation from normal
morphology, physiology, or behavior. The analysis of phenotype plays a key role in clinical …

Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases

R Chen, L Shi, J Hakenberg, B Naughton, P Sklar… - Nature …, 2016 - nature.com
Genetic studies of human disease have traditionally focused on the detection of disease-
causing mutations in afflicted individuals. Here we describe a complementary approach that …

Reconciling evidence-based medicine and precision medicine in the era of big data: challenges and opportunities

JS Beckmann, D Lew - Genome medicine, 2016 - Springer
This era of groundbreaking scientific developments in high-resolution, high-throughput
technologies is allowing the cost-effective collection and analysis of huge, disparate …

Ensembl 2013

P Flicek, I Ahmed, MR Amode, D Barrell… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Ensembl project (http://www. ensembl. org) provides genome information for
sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat …