Molecular adaptations during viral epidemics

ND Rochman, YI Wolf, EV Koonin - EMBO reports, 2022 - embopress.org
In 1977, the world witnessed both the eradication of smallpox and the beginning of the
modern age of genomics. Over the following half‐century, 7 epidemic viruses of international …

Correlated substitutions reveal SARS-like coronaviruses recombine frequently with a diverse set of structured gene pools

A Preska Steinberg, OK Silander… - Proceedings of the …, 2023 - National Acad Sciences
Quantifying SARS-like coronavirus (SL-CoV) evolution is critical to understanding the origins
of SARS-CoV-2 and the molecular processes that could underlie future epidemic viruses …

Intra-vs. interhost evolution of SARS-CoV-2 driven by uncorrelated selection—the evolution thwarted

M Hou, J Shi, Z Gong, H Wen, Y Lan… - Molecular Biology …, 2023 - academic.oup.com
In viral evolution, a new mutation has to proliferate within the host (Stage I) in order to be
transmitted and then compete in the host population (Stage II). We now analyze the intrahost …

Learn from the past to predict viral pandemics

ND Rochman, EV Koonin - 2023 - nature.com
Learn from the past to predict viral pandemics Skip to main content Thank you for visiting
nature.com. You are using a browser version with limited support for CSS. To obtain the best …

The most exposed regions of SARS-CoV-2 structural proteins are subject to strong positive selection and gene overlap may locally modify this behavior

A Rubio, M de Toro, AJ Pérez-Pulido - Msystems, 2024 - Am Soc Microbiol
ABSTRACT The SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) pandemic
that emerged in 2019 has been an unprecedented event in international science, as it has …

[HTML][HTML] Pathogen genomics and One Health: a scoping review of current practices in zoonotic disease research

S Catalano, F Battelli, ZI Traore, J Raghwani, CL Faust… - IJID One Health, 2024 - Elsevier
Objectives Whole-genome sequencing has revolutionised the field of infectious disease
surveillance, enabling near real-time detection of pathogens and tracking how infections …

Junk mail: Viral envelopes promote zoonoses

ND Rochman - Proceedings of the National Academy of …, 2023 - National Acad Sciences
Viruses display enormous genomic diversity, employing effectively all possible routes for the
expression of genetic information and lacking universally shared genes (1). This diverse …

It takes a village to build a virus

ND Rochman - Proceedings of the National Academy of …, 2023 - National Acad Sciences
Your father may have given you your nose, but your sneeze owes its genes to its neighbors.
From family trees to the tree of life, evolution is commonly depicted as an exclusively …

In viral games, refs go to the replay

ND Rochman - EMBO reports, 2023 - embopress.org
After more than 2 years of intensive investigation, the direct ancestors of the novel severe
acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) remain unidentified. Molecular …

Diversity and Distinctive Traits of the Global RNA Virome in Urban Environments

Z Gao, J Wu, AG Lucaci, J Ouyang, L Wang, K Ryon… - papers.ssrn.com
RNA viruses are the primary catalysts for infectious disease outbreaks, epidemics, and
pandemics across multiple hosts including humans. The role of RNA viruses in urban areas …