Protein–DNA/RNA interactions: an overview of investigation methods in the-omics era
F Cozzolino, I Iacobucci, V Monaco… - Journal of Proteome …, 2021 - ACS Publications
The fields of application of functional proteomics are not limited to the study of protein–
protein interactions; they also extend to those involving protein complexes that bind DNA or …
protein interactions; they also extend to those involving protein complexes that bind DNA or …
[HTML][HTML] Single-stranded DNA binding proteins and their identification using machine learning-based approaches
JT Guo, F Malik - Biomolecules, 2022 - mdpi.com
Single-stranded DNA (ssDNA) binding proteins (SSBs) are critical in maintaining genome
stability by protecting the transient existence of ssDNA from damage during essential …
stability by protecting the transient existence of ssDNA from damage during essential …
[HTML][HTML] Insights into the binding mode of AS1411 aptamer to nucleolin
AS1411 aptamer can function as a recognition probe to detect the cell surface nucleolin
overexpressed in cancer cells, however, little is known about their binding process. This …
overexpressed in cancer cells, however, little is known about their binding process. This …
[HTML][HTML] Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana
Understanding gene expression will require understanding where regulatory factors bind
genomic DNA. The frequently used sequence-based motifs of protein-DNA binding are not …
genomic DNA. The frequently used sequence-based motifs of protein-DNA binding are not …
Insights into protein–DNA interactions from hydrogen bond energy‐based comparative protein–ligand analyses
FK Malik, J Guo - Proteins: Structure, Function, and …, 2022 - Wiley Online Library
Hydrogen bonds play important roles in protein folding and protein–ligand interactions,
particularly in specific protein–DNA recognition. However, the distributions of hydrogen …
particularly in specific protein–DNA recognition. However, the distributions of hydrogen …
Tetrahedral DNA frameworks for biosensing and imaging analysis in living cells
Z Qi, C Wei, F Zhang, Z Wang, X Zuo - Nano Today, 2024 - Elsevier
DNA is the primary genetic material that is highly compatible with biological system, and its
intrinsic property of complementary base pairing can be programmed for analysis. However …
intrinsic property of complementary base pairing can be programmed for analysis. However …
Deficiency of Transcription Factor Sp1 Contributes to Hypertrophic Cardiomyopathy
F Zhang, H Zhou, J Xue, Y Zhang, L Zhou… - Circulation …, 2024 - Am Heart Assoc
BACKGROUND: Hypertrophic cardiomyopathy (HCM) is the most prevalent monogenic
heart disorder. However, the pathogenesis of HCM, especially its nongenetic mechanisms …
heart disorder. However, the pathogenesis of HCM, especially its nongenetic mechanisms …
[HTML][HTML] Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia
ZBTB7A belongs to a small family of transcription factors having three members in humans
(7A, 7B, and 7C). They share a BTB/POZ protein interaction domain at the amino end and a …
(7A, 7B, and 7C). They share a BTB/POZ protein interaction domain at the amino end and a …
Mass Spectrometry for Assessing Protein–Nucleic Acid Interactions
Protein− nucleic acid interactions, including the interac-tions of proteins with DNA, RNA, and
DNA/RNA hybrid, often confer important biological consequences to targeted nucleic acids …
DNA/RNA hybrid, often confer important biological consequences to targeted nucleic acids …
Frontiers in design and applications of biomacromolecule@ COFs composites
W Feng, C Guo, R Xu, Z Yang, H Zhang, L Zhou… - Coordination Chemistry …, 2024 - Elsevier
Biomacromolecules with complex structures, are important components of living things. Due
to the sensitivity of biomacromolecules to various influencing factors like temperature …
to the sensitivity of biomacromolecules to various influencing factors like temperature …