[HTML][HTML] Advanced high-throughput plant phenotyping techniques for genome-wide association studies: A review

Q Xiao, X Bai, C Zhang, Y He - Journal of advanced research, 2022 - Elsevier
Background Linking phenotypes and genotypes to identify genetic architectures that
regulate important traits is crucial for plant breeding and the development of plant genomics …

Interdisciplinary strategies to enable data-driven plant breeding in a changing climate

A Kusmec, Z Zheng, S Archontoulis… - One Earth, 2021 - cell.com
This perspective lays out a framework to enable the breeding of crops that can meet
worldwide demand under the challenges of global climate change. Past work in various …

[PDF][PDF] Evaluating the power and limitations of genome-wide association studies in Caenorhabditis elegans

SJ Widmayer, KS Evans, S Zdraljevic, EC Andersen - G3, 2022 - academic.oup.com
Quantitative genetics in Caenorhabditis elegans seeks to identify naturally segregating
genetic variants that underlie complex traits. Genome-wide association studies scan the …

Genome-wide association studies reveal novel loci for resistance to groundnut rosette disease in the African core groundnut collection

E Achola, P Wasswa, D Fonceka, JP Clevenger… - Theoretical and Applied …, 2023 - Springer
Key message We identified markers associated with GRD resistance after screening an
Africa-wide core collection across three seasons in Uganda Abstract Groundnut is cultivated …

Exploring genetic architecture for pod-related traits in soybean using image-based phenotyping

F Chang, W Lv, P Lv, Y Xiao, W Yan, S Chen… - Molecular …, 2021 - Springer
Mature pod color (PC) and pod size (PS) served as important characteristics are used in the
soybean breeding programs. However, manual phenotyping of such complex traits is time …

Exploring efficient linear mixed models to detect quantitative trait locus-by-environment interactions

E Yamamoto, H Matsunaga - G3, 2021 - academic.oup.com
Genotype-by-environment (G× E) interactions are important for understanding genotype–
phenotype relationships. To date, various statistical models have been proposed to account …

Identification and utilization of genetic determinants of trait measurement errors in image-based, high-throughput phenotyping

Y Zhou, A Kusmec, SV Mirnezami, L Attigala… - The Plant …, 2021 - academic.oup.com
The accuracy of trait measurements greatly affects the quality of genetic analyses. During
automated phenotyping, trait measurement errors, ie differences between automatically …

Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory

Y Sato, E Yamamoto, KK Shimizu, AJ Nagano - Heredity, 2021 - nature.com
An increasing number of field studies have shown that the phenotype of an individual plant
depends not only on its genotype but also on those of neighboring plants; however, this fact …

Assessment of two statistical approaches for variance genome-wide association studies in plants

MD Murphy, SB Fernandes, G Morota, AE Lipka - Heredity, 2022 - nature.com
Genomic loci that control the variance of agronomically important traits are increasingly
important due to the profusion of unpredictable environments arising from climate change …

Identifying novel associations in GWAS by hierarchical Bayesian latent variable detection of differentially misclassified phenotypes

A Shafquat, RG Crystal, JG Mezey - BMC bioinformatics, 2020 - Springer
Background Heterogeneity in the definition and measurement of complex diseases in
Genome-Wide Association Studies (GWAS) may lead to misdiagnoses and misclassification …