Long noncoding RNAs that respond to Fusarium oxysporum infection in 'Cavendish' banana (Musa acuminata)

W Li, C Li, S Li, M Peng - Scientific reports, 2017 - nature.com
Long noncoding RNAs (lncRNAs) are a class of genes that influence a variety of biological
functions through acting as signal, decoy, guide, and scaffold molecules. In banana (Musa …

Roles of non-coding RNAs in response to nitrogen availability in plants

M Fukuda, T Fujiwara, S Nishida - International Journal of Molecular …, 2020 - mdpi.com
Nitrogen (N) is an essential nutrient for plant growth and development; therefore, N
deficiency is a major limiting factor in crop production. Plants have evolved mechanisms to …

Analysis of lncRNAs in Lupinus mutabilis (Tarwi) and Their Potential Role in Drought Response

M Hidalgo, C Ramos, G Zolla - Non-coding RNA, 2023 - mdpi.com
Lupinus mutabilis is a legume with high agronomic potential and available transcriptomic
data for which lncRNAs have not been studied. Therefore, our objective was to identify …

Genome-wide screening and characterization of long noncoding RNAs involved in flowering/bolting of Lactuca sativa

A Soorni, M Karimi, B Al Sharif, K Habibi - BMC plant biology, 2023 - Springer
Abstract Background Lettuce (Lactuca sativa L.) is considered the most important vegetable
in the leafy vegetable group. However, bolting affects quality, gives it a bitter taste, and as a …

MD-MLI: Prediction of miRNA–lncRNA interaction by using multiple features and hierarchical deep learning

J Song, S Tian, L Yu, Q Yang, Y Xing… - IEEE/ACM …, 2020 - ieeexplore.ieee.org
Long non-coding RNA (lncRNA) can interact with microRNA (miRNA) and play an important
role in inhibiting or activating the expression of target genes and the occurrence and …

mirtronDB: a mirtron knowledge base

BHR Da Fonseca, DS Domingues… - Bioinformatics, 2019 - academic.oup.com
Motivation Mirtrons arise from short introns with atypical cleavage by using the splicing
mechanism. In the current literature, there is no repository centralizing and organizing the …

[HTML][HTML] Long non-coding RNA and microRNA landscape of two major domesticated cotton species

A Singh, AT Vivek, K Gupta, S Sharma… - Computational and …, 2023 - Elsevier
Allotetraploid cotton plants Gossypium hirsutum and Gossypium barbadense have been
widely cultivated for their natural, renewable textile fibres. Even though ncRNAs in …

Taxonomically Restricted Genes Are Associated With Responses to Biotic and Abiotic Stresses in Sugarcane (Saccharum spp.)

CB Cardoso-Silva, AH Aono, MC Mancini… - Frontiers in plant …, 2022 - frontiersin.org
Orphan genes (OGs) are protein-coding genes that are restricted to particular clades or
species and lack homology with genes from other organisms, making their biological …

Cold Induced Antisense Transcription of FLOWERING LOCUS C in Distant Grasses

F Jiao, K Pahwa, M Manning, N Dochy… - Frontiers in Plant …, 2019 - frontiersin.org
Functional conservation of RNAs between different species is a key argument for their
importance. While few long non-coding RNAs are conserved at the sequence level, many …

Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species

Y Zhu, L Chen, X Hong, H Shi, X Li - BMC genomics, 2022 - Springer
Background Previous studies on plant long noncoding RNAs (lncRNAs) lacked consistency
and suffered from many factors like heterogeneous data sources and experimental …