Ancient plant genomics in archaeology, herbaria, and the environment
The ancient DNA revolution of the past 35 years has driven an explosion in the breadth,
nuance, and diversity of questions that are approachable using ancient biomolecules, and …
nuance, and diversity of questions that are approachable using ancient biomolecules, and …
[HTML][HTML] Genome skimming herbarium specimens for DNA barcoding and phylogenomics
CX Zeng, PM Hollingsworth, J Yang, ZS He, ZR Zhang… - Plant Methods, 2018 - Springer
Background The world's herbaria contain millions of specimens, collected and named by
thousands of researchers, over hundreds of years. However, this treasure has remained …
thousands of researchers, over hundreds of years. However, this treasure has remained …
[HTML][HTML] De novo hybrid assembly of the salvia miltiorrhiza mitochondrial genome provides the first evidence of the multi-chromosomal mitochondrial DNA structure of …
H Yang, H Chen, Y Ni, J Li, Y Cai, B Ma, J Yu… - International Journal of …, 2022 - mdpi.com
Salvia miltiorrhiza has been an economically important medicinal plant. Previously, an S.
miltiorrhiza mitochondrial genome (mitogenome) assembled from Illumina short reads …
miltiorrhiza mitochondrial genome (mitogenome) assembled from Illumina short reads …
Phylogenomics using low‐depth whole genome sequencing: A case study with the olive tribe
JK Olofsson, I Cantera, C Van de Paer… - Molecular ecology …, 2019 - Wiley Online Library
Species trees have traditionally been inferred from a few selected markers, and genome‐
wide investigations remain largely restricted to model organisms or small groups of species …
wide investigations remain largely restricted to model organisms or small groups of species …
[HTML][HTML] Herbarium-based science in the twenty-first century
G Besnard, M Gaudeul, S Lavergne, S Muller… - Botany …, 2018 - Taylor & Francis
Herbarium collections are natural history collections and as such, are repositories of plant
biodiversity and have been central to botanical knowledge for over four centuries. The Index …
biodiversity and have been central to botanical knowledge for over four centuries. The Index …
Conflicting results from mitochondrial genomic data challenge current views of Rubiaceae phylogeny
C Rydin, N Wikström, B Bremer - American Journal of Botany, 2017 - Wiley Online Library
PREMISE OF THE STUDY: Reconstruction of plant phylogeny has heavily relied on single‐
gene or multigene plastid data. New sequencing methods have led to an increasing number …
gene or multigene plastid data. New sequencing methods have led to an increasing number …
Herbarium genomics: skimming and plastomics from archival specimens
FT Bakker - Webbia, 2017 - Taylor & Francis
Using massive parallel sequencing, which has become known as second-generation
sequencing, some of the classic roadblocks to using herbarium DNA have been overcome …
sequencing, some of the classic roadblocks to using herbarium DNA have been overcome …
[HTML][HTML] Resolving the phylogeny of the olive family (Oleaceae): confronting information from organellar and nuclear genomes
J Dupin, P Raimondeau, C Hong-Wa, S Manzi… - Genes, 2020 - mdpi.com
The olive family, Oleaceae, is a group of woody plants comprising 28 genera and ca. 700
species, distributed on all continents (except Antarctica) in both temperate and tropical …
species, distributed on all continents (except Antarctica) in both temperate and tropical …
A comprehensive phylogenomic study of the monocot order Commelinales, with a new classification of Commelinaceae
AR Zuntini, LP Frankel, L Pokorny… - American Journal of …, 2021 - Wiley Online Library
Premise Resolving relationships within order Commelinales has posed quite a challenge,
as reflected in its unstable infra‐familial classification. Thus, we investigated (1) …
as reflected in its unstable infra‐familial classification. Thus, we investigated (1) …
Prospects on the evolutionary mitogenomics of plants: A case study on the olive family (Oleaceae)
C Van de Paer, O Bouchez… - Molecular ecology …, 2018 - Wiley Online Library
The mitogenome is rarely used to reconstruct the evolutionary history of plants, contrary to
nuclear and plastid markers. Here, we evaluate the usefulness of mitochondrial DNA for …
nuclear and plastid markers. Here, we evaluate the usefulness of mitochondrial DNA for …