Uncertainty quantification in drug design
Highlights•Review of the state-of-the-art in uncertainty quantification in drug
design.•Examples from drug-design settings are provided.•Impact on decision making is …
design.•Examples from drug-design settings are provided.•Impact on decision making is …
[HTML][HTML] Computational analyses of mechanism of action (MoA): data, methods and integration
The elucidation of a compound's Mechanism of Action (MoA) is a challenging task in the
drug discovery process, but it is important in order to rationalise phenotypic findings and to …
drug discovery process, but it is important in order to rationalise phenotypic findings and to …
Multispecies machine learning predictions of in vitro intrinsic clearance with uncertainty quantification analyses
R Rodríguez-Pérez, M Trunzer… - Molecular …, 2022 - ACS Publications
In pharmaceutical research, compounds are optimized for metabolic stability to avoid a too
fast elimination of the drug. Intrinsic clearance (CLint) measured in liver microsomes or …
fast elimination of the drug. Intrinsic clearance (CLint) measured in liver microsomes or …
[HTML][HTML] A universal similarity based approach for predictive uncertainty quantification in materials science
V Korolev, I Nevolin, P Protsenko - Scientific Reports, 2022 - nature.com
Immense effort has been exerted in the materials informatics community towards enhancing
the accuracy of machine learning (ML) models; however, the uncertainty quantification (UQ) …
the accuracy of machine learning (ML) models; however, the uncertainty quantification (UQ) …
Applications of artificial intelligence in drug design: opportunities and challenges
Artificial intelligence (AI) has undergone rapid development in recent years and has been
successfully applied to real-world problems such as drug design. In this chapter, we review …
successfully applied to real-world problems such as drug design. In this chapter, we review …
Comparison of chemical structure and cell morphology information for multitask bioactivity predictions
The understanding of the mechanism-of-action (MoA) of compounds and the prediction of
potential drug targets play an important role in small-molecule drug discovery. The aim of …
potential drug targets play an important role in small-molecule drug discovery. The aim of …
[PDF][PDF] Uncertainty quantification: Can we trust artificial intelligence in drug discovery?
J Yu, D Wang, M Zheng - Iscience, 2022 - cell.com
The problem of human trust is one of the most fundamental problems in applied artificial
intelligence in drug discovery. In silico models have been widely used to accelerate the …
intelligence in drug discovery. In silico models have been widely used to accelerate the …
[HTML][HTML] Testing the predictive power of reverse screening to infer drug targets, with the help of machine learning
A Daina, V Zoete - Communications Chemistry, 2024 - nature.com
Estimating protein targets of compounds based on the similarity principle—similar molecules
are likely to show comparable bioactivity—is a long-standing strategy in drug research …
are likely to show comparable bioactivity—is a long-standing strategy in drug research …
[HTML][HTML] Probabilistic Random Forest improves bioactivity predictions close to the classification threshold by taking into account experimental uncertainty
Measurements of protein–ligand interactions have reproducibility limits due to experimental
errors. Any model based on such assays will consequentially have such unavoidable errors …
errors. Any model based on such assays will consequentially have such unavoidable errors …
Large-Scale Screening for High Conductivity Ionic Liquids via Machine Learning Algorithm Utilizing Graph Neural Network-Based Features
C Song, C Wang, F Fang, G Zhou, Z Dai… - Journal of Chemical & …, 2024 - ACS Publications
Ionic conductivity is a crucial parameter in the electrochemical applications of ionic liquids
(ILs). Conventional methods to obtain this parameter, ie, experimental measurements or …
(ILs). Conventional methods to obtain this parameter, ie, experimental measurements or …