Artificial intelligence in the prediction of protein–ligand interactions: recent advances and future directions
New drug production, from target identification to marketing approval, takes over 12 years
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …
Artificial intelligence in virtual screening: Models versus experiments
A typical drug discovery project involves identifying active compounds with significant
binding potential for selected disease-specific targets. Experimental high-throughput …
binding potential for selected disease-specific targets. Experimental high-throughput …
On the frustration to predict binding affinities from protein–ligand structures with deep neural networks
Accurate prediction of binding affinities from protein–ligand atomic coordinates remains a
major challenge in early stages of drug discovery. Using modular message passing graph …
major challenge in early stages of drug discovery. Using modular message passing graph …
[HTML][HTML] A brief review of protein–ligand interaction prediction
The task of identifying protein–ligand interactions (PLIs) plays a prominent role in the field of
drug discovery. However, it is infeasible to identify potential PLIs via costly and laborious in …
drug discovery. However, it is infeasible to identify potential PLIs via costly and laborious in …
From Proteins to Ligands: Decoding Deep Learning Methods for Binding Affinity Prediction
R Gorantla, A Kubincova, AY Weiße… - Journal of Chemical …, 2023 - ACS Publications
Accurate in silico prediction of protein–ligand binding affinity is important in the early stages
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
Deepbindgcn: Integrating molecular vector representation with graph convolutional neural networks for protein–ligand interaction prediction
H Zhang, KM Saravanan, JZH Zhang - Molecules, 2023 - mdpi.com
The core of large-scale drug virtual screening is to select the binders accurately and
efficiently with high affinity from large libraries of small molecules in which non-binders are …
efficiently with high affinity from large libraries of small molecules in which non-binders are …
Improving protein–ligand interaction modeling with cryo-em data, templates, and deep learning in 2021 ligand model challenge
Elucidating protein–ligand interaction is crucial for studying the function of proteins and
compounds in an organism and critical for drug discovery and design. The problem of …
compounds in an organism and critical for drug discovery and design. The problem of …
Recent advancements in computational drug design algorithms through machine learning and optimization
S Choudhuri, M Yendluri, S Poddar, A Li… - Kinases and …, 2023 - mdpi.com
The goal of drug discovery is to uncover new molecules with specific chemical properties
that can be used to cure diseases. With the accessibility of machine learning techniques, the …
that can be used to cure diseases. With the accessibility of machine learning techniques, the …
Sunsetting binding MOAD with its last data update and the addition of 3D-ligand polypharmacology tools
Binding MOAD is a database of protein–ligand complexes and their affinities with many
structured relationships across the dataset. The project has been in development for over 20 …
structured relationships across the dataset. The project has been in development for over 20 …
Prediction of protein–ligand binding affinity via deep learning models
H Wang - Briefings in Bioinformatics, 2024 - academic.oup.com
Accurately predicting the binding affinity between proteins and ligands is crucial in drug
screening and optimization, but it is still a challenge in computer-aided drug design. The …
screening and optimization, but it is still a challenge in computer-aided drug design. The …