Surface-triggered cascade reactions between DNA linkers direct the self-assembly of colloidal crystals of controllable thickness

PK Jana, BM Mognetti - Nanoscale, 2019 - pubs.rsc.org
Functionalizing colloids with reactive DNA linkers is a versatile way of programming self-
assembly. DNA selectivity provides direct control over colloid–colloid interactions allowing …

Noise-reduced nicking enzyme-based isothermal amplification via blocking the 3′-end of the amplicon using a novel fluorophore-immobilized binder

EK Jang, MJ Lee, J Kim, JW Lee, SP Pack - Sensors and Actuators B …, 2023 - Elsevier
Nicking enzyme amplification reaction (NEAR) is a promising isothermal DNA amplification
method that has been applied in various sensing platforms as a promising signal amplifier …

[HTML][HTML] Rapid Determination of RNA Modifications in Consensus Motifs by Nuclease Protection with Ion-Tagged Oligonucleotide Probes and Matrix-Assisted Laser …

ME Melzer, JV Sweedler, KD Clark - Genes, 2022 - mdpi.com
The reversible and substoichiometric modification of RNA has recently emerged as an
additional layer of translational regulation in normal biological function and disease …

Competitive Amplification Networks enable molecular pattern recognition with PCR

JP Goertz, R Sedgwick, F Smith, M Kaforou, VJ Wright… - bioRxiv, 2023 - biorxiv.org
Gene expression has great potential to be used as a clinical diagnostic tool. Researchers
have discovered a wealth of patterns in gene expression that are predictive of a wide range …

[HTML][HTML] A Fluorogenic Covalent Chromone-Based Intercalator with a Mega-Stokes Shift for Sensing DNA Hybridization

S Vincent, S Mallick, G Barnoin, HN Le, A Burger… - Chemosensors, 2023 - mdpi.com
Forced intercalation (FIT) probes have proven to be a reliable, rapid, inexpensive, and
accurate method for the detection and visualization of specific nucleic acid sequences. The …

Site-specific fluorophore labeling of guanosines in RNA G-quadruplexes

T Hagen, AL Malinowska, HL Lightfoot, M Bigatti… - ACS …, 2019 - ACS Publications
RNA G-quadruplexes are RNA secondary structures that are implicated in many cellular
processes. Although conventional biophysical techniques are widely used for their in vitro …

Interaction between Orange Carotenoid Protein and mesoporous silica: from spectroscopic investigations to photoactive nanodevices

S Leccese - 2022 - theses.hal.science
This thesis deals with the study of interactions between the Orange Carotenoid Protein and
mesoporous silica SBA-15, aiming to the development of photoactive nano-devices. The …

Design of 2′-phenylethynylpyrene excimer forming DNA/RNA probes for homogeneous SNP detection: the attachment manner matters

K Astakhova, AV Golovin, IA Prokhorenko, AV Ustinov… - Tetrahedron, 2017 - Elsevier
Phenylethynylpyrene fluorophore (1-PEPy) has long-wavelength shifted emission and
higher photostability compared to pyrene, retaining, however, pyrene's ability to form …

Single-molecule protein dynamics during DNA replication

G Kaur - 2022 - ro.uow.edu.au
Observing the processes of life that occur in all cellular organisms at the level of single
molecules has allowed a deeper understanding of the dynamic processes taking place in …

Mesoscopic modelling of Cy3 and Cy5 dyes attached to DNA duplexes

P Miranda, LM Oliveira, G Weber - Biophysical Chemistry, 2017 - Elsevier
Cy3 and Cy5 dyes linked to the 5′ end of a double stranded DNA molecule are known to
attach to both strands in a way that is very similar to an additional base pair and has a …